On Sun, Sep 27, 2009 at 7:48 AM, Sean Davis <seand...@gmail.com> wrote:
> On Sun, Sep 27, 2009 at 8:10 AM, Peng Yu <pengyu...@gmail.com> wrote:
>> Hi,
>>
>> My rpy2 is of version 2.0.7.
>>
>> I got the following error when I load 'oligo'. Can somebody let me
>> know how to fix the problem?
>>
>> Regards,
>> Peng
>>
>>>>> from rpy2.robjects import r
>>>>> r.library('oligo')
>> Loading required package: oligoClasses
>> Loading required package: Biobase
>>
>> Welcome to Bioconductor
>>
>> Vignettes contain introductory material. To view, type
>> 'openVignette()'. To cite Bioconductor, see
>> 'citation("Biobase")' and for packages 'citation(pkgname)'.
>>
>> Loading required package: preprocessCore
>> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>> unable to load shared library
>> '/usr/local/lib64/R/library/affxparser/libs/affxparser.so':
>> /usr/local/lib64/R/library/affxparser/libs/affxparser.so: undefined
>> symbol: R_NilValue
>> Error: package/namespace load failed for 'oligo'
>
> This looks like a problem from the R side. Can you load the oligo
> package from R?
Yes. Shall reinstall R in my system?
> library(oligo)
Loading required package: oligoClasses
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'openVignette()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
Loading required package: preprocessCore
Welcome to oligo version 1.8.1
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