On Sun, Sep 27, 2009 at 8:10 AM, Peng Yu <pengyu...@gmail.com> wrote:
> Hi,
>
> My rpy2 is of version 2.0.7.
>
> I got the following error when I load 'oligo'. Can somebody let me
> know how to fix the problem?
>
> Regards,
> Peng
>
>>>> from rpy2.robjects import r
>>>> r.library('oligo')
> Loading required package: oligoClasses
> Loading required package: Biobase
>
> Welcome to Bioconductor
>
> Vignettes contain introductory material. To view, type
> 'openVignette()'. To cite Bioconductor, see
> 'citation("Biobase")' and for packages 'citation(pkgname)'.
>
> Loading required package: preprocessCore
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
> unable to load shared library
> '/usr/local/lib64/R/library/affxparser/libs/affxparser.so':
> /usr/local/lib64/R/library/affxparser/libs/affxparser.so: undefined
> symbol: R_NilValue
> Error: package/namespace load failed for 'oligo'
This looks like a problem from the R side. Can you load the oligo
package from R?
Sean
> Traceback (most recent call last):
> File "<stdin>", line 1, in <module>
> File
> "/home/pengy/utility/linux/opt/Python-2.6.2/lib/python2.6/site-packages/rpy2/robjects/__init__.py",
> line 423, in __call__
> res = super(RFunction, self).__call__(*new_args, **new_kwargs)
> rinterface.RRuntimeError: Error: package/namespace load failed for 'oligo'
>
>>>> r.library('graphics')
> <RVector - Python:0x2aaaafa20950 / R:0x1efdcbc0>
>
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