What do you get when you type
R RHOME
on the command line?
-G
On Nov 5, 2007, at 11:01AM , Andrew Jones wrote:
I don't get any error messages when I start up R by itself. And
methods and grDevices are both listed when I do the library()
command. I don't actually use R independently of rpy, so I'm not
sure of how to test that they are working correctly other than
that. Is there something I can run to test it?
On 11/5/07, Gregory Warnes <[EMAIL PROTECTED]> wrote:
These messages are generated by the R shared library as it attempts
to load the fundimental R packages it needs. This usually means
that your installation of R is lacking properly installed versions of
these packages. Does R start up and run properly when run directly?
-G
On Nov 2, 2007, at 3:56PM , Andrew Jones wrote:
> When I try to import rpy I get the following messages:
>
> Python 2.4.4 (#9, Oct 30 2007, 15:13:19)
> [GCC 4.1.0 20060304 (Red Hat 4.1.0-3)] on linux2
> Type "help", "copyright", "credits" or "license" for more
information.
> >>> import rpy
> RHOME= /usr/local/lib/R
> RVERSION= 2.6.0
> RVER= 2060
> RUSER= /home/emu/ajones
> Loading Rpy version 2060 ..Error in dyn.load(file, ...) :
> unable to load shared library '/usr/local/lib/R/library/methods/
> libs/methods.so':
> /usr/local/lib/R/library/methods/libs/methods.so: undefined
> symbol: Rf_allocS4Object
> Error in dyn.load(file, ...) :
> unable to load shared library '/usr/local/lib/R/library/grDevices/
> libs/grDevices.so':
> /usr/local/lib/R/library/grDevices/libs/grDevices.so: undefined
> symbol: utf8locale
> In addition: Warning message:
> package "methods" in options("defaultPackages") was not found
> Error in dyn.load (file, ...) :
> unable to load shared library '/usr/local/lib/R/library/grDevices/
> libs/grDevices.so':
> /usr/local/lib/R/library/grDevices/libs/grDevices.so: undefined
> symbol: utf8locale
> In addition: Warning message:
> package grDevices in options("defaultPackages") was not found
> Error in dyn.load(file, ...) :
> unable to load shared library '/usr/local/lib/R/library/grDevices/
> libs/grDevices.so':
> /usr/local/lib/R/library/grDevices/libs/grDevices.so: undefined
> symbol: utf8locale
> In addition: Warning message:
> package graphics in options("defaultPackages") was not found
> Error in dyn.load(file, ...) :
> unable to load shared library '/usr/local/lib/R/library/methods/
> libs/methods.so':
> /usr/local/lib/R/library/methods/libs/methods.so: undefined
> symbol: Rf_allocS4Object
> In addition: Warning message:
> package stats in options("defaultPackages") was not found
> During startup - Warning message:
> package methods in options("defaultPackages") was not found
> Done.
> Creating the R object 'r' .. Done
>
>
> I'm using R version 2.6.0 and rpy version 1.0RC3. I'm running
> fedora core 5. I compiled R with the --enable-R-shlib --enable-
> BLAS-shlib flags. I've tried removing R and rpy and recompiling
> both into a fresh install. I've also checked to make sure there
> wasn't an alternate version of R installed that would be confusing
> things. Is there something I am doing wrong? Any help would be
> appreciated. Thanks,
>
> Andrew
>
>
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