Hi, Greg, What invocation should I use?
"conda install -c greglandrum rdkit-postgresql95" still complains that I need rdkit 3.4. "conda update rdkit" fails to update rdkit from 3.1, whether or not I specify "-c greglandrum". Thanks, -P. On Tue, Aug 30, 2016 at 12:30 AM, Greg Landrum <[email protected]> wrote: > grrr, I uploaded the rdkit binaries to the wrong place. > That's taken care of now too. > > please try again. > -greg > > > On Tue, Aug 30, 2016 at 5:59 AM, Peter S. Shenkin <[email protected]> > wrote: > >> Hi, Greg, >> >> That fails for me because it requires rdkit 3.4 at minimum. >> >> Earlier, I installed 3.1 using conda. There doesn't appear to be a way to >> install 3.4 using conda. (I tried the default anaconda and also "-c >> grelandrum".) >> >> -P. >> >> On Mon, Aug 29, 2016 at 10:55 PM, Greg Landrum <[email protected]> >> wrote: >> >>> Sorry about that. The command I sent was wrong, and I had made a mistake >>> when I uploaded the file. >>> >>> Please try this one: >>> conda install -c greglandrum rdkit-postgresql95 >>> >>> -greg >>> >>> >>> On Mon, Aug 29, 2016 at 10:47 PM, Peter S. Shenkin <[email protected]> >>> wrote: >>> >>>> Hi, Greg, >>>> >>>> Thanks. I tried your invocation, but conda cannot find the package: >>>> >>>> (rdk0) > conda install -c https://conda.anaconda.org/greglandrum >>>> rdkit-postgresql95 2>&1 | tee install_rdkit-postresql_fr_gre >>>> glandrum.log >>>> >>>> Fetching package metadata ......... >>>> Solving package specifications: . >>>> Error: Package missing in current osx-64 channels: >>>> - rdkit-postgresql95 >>>> >>>> Close matches found; did you mean one of these? >>>> rdkit-postgresql95: postgresql >>>> >>>> You can search for packages on anaconda.org with >>>> anaconda search -t conda rdkit-postgresql95 >>>> >>>> On Mon, Aug 29, 2016 at 2:52 AM, Greg Landrum <[email protected]> >>>> wrote: >>>> >>>>> Hi Peter, >>>>> >>>>> Thanks for pointing out the conda postgresql build; it's great that >>>>> they are providing this now (though it's a bit irritating that it doesn't >>>>> have readline support). I was able to do a Mac build of the RDKit >>>>> cartridge >>>>> against that postgresql install this morning. >>>>> >>>>> Since this uses a different set of dependencies, I'm not comfortable >>>>> pushing this to the main rdkit channel until after Riccardo and I have had >>>>> a chance to talk about how we want to handle PostgreSQL going forward. In >>>>> the meantime there is a Mac build in my channel at anaconda.org. It >>>>> would be great if you could try this out and let me know if it works for >>>>> you: >>>>> conda install -c https://conda.anaconda.org/greglandrum >>>>> rdkit-postgresql95 >>>>> >>>>> Best, >>>>> -greg >>>>> >>>>> >>>>> On Sat, Aug 27, 2016 at 7:49 AM, Peter S. Shenkin <[email protected]> >>>>> wrote: >>>>> >>>>>> Thanks, Greg. I assumed that because the installation manager gave a >>>>>> conda invocation for rdkit-postgresql, it must exist. Perhaps a bad >>>>>> assumption, but that's why I guessed that it's just not been ported to >>>>>> OS X. >>>>>> >>>>>> FWIW, there is a conda build of PostgreSQL, called "postgresql". >>>>>> >>>>>> Thanks again, >>>>>> -P. >>>>>> >>>>>> -P. >>>>>> >>>>>> On Sat, Aug 27, 2016 at 12:56 AM, Greg Landrum < >>>>>> [email protected]> wrote: >>>>>> >>>>>>> There just isn't a conda build (yet) for the cartridge (or, I >>>>>>> believe, for PostgreSQL itself). >>>>>>> >>>>>>> I did a bit of looking this morning and it is going to require some >>>>>>> work to get things working. >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> On Sat, Aug 27, 2016 at 6:25 AM +0200, "Peter S. Shenkin" < >>>>>>> [email protected]> wrote: >>>>>>> >>>>>>> Well, actually, thought I'd try the conda install of >>>>>>>> rdkit-postgresql, using: >>>>>>>> >>>>>>>> conda install -c https://conda.binstar.org/rdkit rdkit-postgresql >>>>>>>> >>>>>>>> I get the message: >>>>>>>> >>>>>>>> Error: Package missing in current osx-64 channels: >>>>>>>> - rdkit-postgresql >>>>>>>> Close matches found; did you mean one of these? >>>>>>>> rdkit-postgresql: postgresql >>>>>>>> >>>>>>>> >>>>>>>> Is the cartridge not supported on OS X? >>>>>>>> >>>>>>>> -P. >>>>>>>> >>>>>>>> On Sat, Aug 27, 2016 at 12:10 AM, Greg Landrum < >>>>>>>> [email protected]> wrote: >>>>>>>> >>>>>>>>> >>>>>>>>> >>>>>>>>> On Sat, Aug 27, 2016 at 5:23 AM, Peter S. Shenkin < >>>>>>>>> [email protected]> wrote: >>>>>>>>> >>>>>>>>>> >>>>>>>>>> Lazy execution rules. >>>>>>>>>> >>>>>>>>> >>>>>>>>> :-) >>>>>>>>> >>>>>>>> >>>>>>>> >>>>>> >>>>> >>>> >>> >> >
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