On May 10, 2011, at 2:37 AM, Adrian Schreyer wrote:

> Open Babel can read PDB files but the last time I checked it was not possible 
> to get all the structure factors from atoms.

If someone can explain to me what you actually want, that can get fixed. (I'm 
more a materials scientist than a biochemist.) That's more of a subject for the 
Open Babel tracker` or mailing list.

And I completely understand Greg's view on processing PDB. It's one thing if 
you're talking about "authentic" PDB files, but the file format has been abused 
horribly and the OB version is a (necessary) mess. Any time we try to clean it 
up, people report a dozen bugs on their not-quite-standard files.

Cheers,
-Geoff
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