On May 9, 2011, at 11:29 AM, Greg Landrum wrote:

> Hi Paul
> 
> On Mon, May 9, 2011 at 1:13 PM,  <[email protected]> wrote:
>> 
>> Dear folks,
>> 
>> is there a way to add occupancy & B-factors (e.g. 1.00 50.0) to a PDB file?
>> 
> 
> At the moment the RDKit has no way of processing PDB files.
> 
> -greg

If you need to work with PDB files, you might look at biopython, which has 
support for that format available.  I don't know specifically about occupancy 
and B-factors, but it would be someplace to start.

Andy


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