r-sig-phylo  

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• • Re: [R-sig-phylo] Function to Extend Tips? Joseph W. Brown
  • Re: [R-sig-phylo] Function to Extend Tips? William Gearty
  • Re: [R-sig-phylo] Function to Extend Tips? Joseph W. Brown
• [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm Diogo B. Provete
  • Re: [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm Jarrod Hadfield
  • Re: [R-sig-phylo] How to incorporate intraspecific variation in MCMCglmm Jarrod Hadfield
• [R-sig-phylo] Test statistic Valentine Usongo
• [R-sig-phylo] changes in results of OUwie Diego Salazar Tortosa
• [R-sig-phylo] Ann: Advanced course on Model Based Statistical Inference in Biogeography, Dec 11-15, Barcelona (Spain) Soledad De Esteban-Trivigno
• [R-sig-phylo] FW: error on finding the most distinctive clades Fernanda Coelho De Souza
• [R-sig-phylo] Is my subset of species random? Ondřej Mikula
• [R-sig-phylo] Error in eigen(val, only.values = TRUE) : infinite or missing values in 'x' when estimating lambda in pgls Lydia
  • Re: [R-sig-phylo] Error in eigen(val, only.values = TRUE) : infinite or missing values in 'x' when estimating lambda in pgls Emmanuel Paradis
• [R-sig-phylo] Fwd: Fw: Help with tree manipulation Monica Carlsen
  • Re: [R-sig-phylo] Fwd: Fw: Help with tree manipulation Cecile Ane
• [R-sig-phylo] Nnode not equal to length of node.labels Mario José Marques-Azevedo
  • Re: [R-sig-phylo] Nnode not equal to length of node.labels Liam J. Revell
• [R-sig-phylo] Course on Landscape Genomics/Genetics (RodneyDyer) UK 6-10November Oliver Hooker
• [R-sig-phylo] Randomly Resolved Polytomies Laura Jackson
  • Re: [R-sig-phylo] Randomly Resolved Polytomies Liam J. Revell
  • Re: [R-sig-phylo] Randomly Resolved Polytomies Liam J. Revell
  • Re: [R-sig-phylo] Randomly Resolved Polytomies Laura Jackson
  • Re: [R-sig-phylo] Randomly Resolved Polytomies Laura Jackson
  • Re: [R-sig-phylo] Randomly Resolved Polytomies Liam J. Revell
• [R-sig-phylo] Add terminal branches to tree Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Add terminal branches to tree [email protected]
  • Re: [R-sig-phylo] Add terminal branches to tree Liam Revell
  • Re: [R-sig-phylo] Add terminal branches to tree Christoph Heibl
  • Re: [R-sig-phylo] Add terminal branches to tree Eliot Miller
  • Re: [R-sig-phylo] Add terminal branches to tree Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Add terminal branches to tree David Bapst
  • Re: [R-sig-phylo] Add terminal branches to tree Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Add terminal branches to tree David Bapst
• [R-sig-phylo] How to set up the minimum limit of the imputated value in phylopars(), (RPhylopars package), in R Judit Mokos
  • Re: [R-sig-phylo] How to set up the minimum limit of the imputated value in phylopars(), (RPhylopars package), in R Cecile Ane
• [R-sig-phylo] need finite 'xlim' values error with plot.phylo Santiago Sánchez
  • Re: [R-sig-phylo] need finite 'xlim' values error with plot.phylo Liam Revell
  • Re: [R-sig-phylo] need finite 'xlim' values error with plot.phylo Santiago Sánchez
  • Re: [R-sig-phylo] need finite 'xlim' values error with plot.phylo Emmanuel Paradis
• [R-sig-phylo] Searching only ultrametric trees William Gelnaw
• [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA Joseph W. Brown
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA Klaus Schliep
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA Joseph W. Brown
  • [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA Juan Antonio Balbuena
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA Liam J. Revell
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA Liam J. Revell
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA Joseph W. Brown
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA Klaus Schliep
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE\'s getMRCA Joseph W. Brown
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA Emmanuel Paradis
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA Joseph W. Brown
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA Emmanuel Paradis
  • Re: [R-sig-phylo] A possible alternate MRCA function to APE's getMRCA Klaus Schliep
• [R-sig-phylo] Function to drop clade Mario José Marques-Azevedo
• [R-sig-phylo] Course on genetic data analysuis using R Oliver Hooker
• [R-sig-phylo] ape prop.part error malloc(): memory corruption Mario José Marques-Azevedo
  • Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption Eliot Miller
  • Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption Mario José Marques-Azevedo
  • Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption Mario José Marques-Azevedo
  • Re: [R-sig-phylo] ape prop.part error malloc(): memory corruption Mario José Marques-Azevedo
• [R-sig-phylo] PhD position in comparative and meta-analysis Shinichi Nakagawa
• [R-sig-phylo] ape package: improvement suggestion in color handling for mosaic in phydataplot? Elizabeth Purdom
  • Re: [R-sig-phylo] ape package: improvement suggestion in color handling for mosaic in phydataplot? Emmanuel Paradis
• [R-sig-phylo] possible bug in the phydataplot in ape package? Elizabeth Purdom
  • Re: [R-sig-phylo] possible bug in the phydataplot in ape package? Emmanuel Paradis
• [R-sig-phylo] Rooting trees in R Valentine Usongo
  • Re: [R-sig-phylo] Rooting trees in R Jacob Berv
  • Re: [R-sig-phylo] Rooting trees in R Valentine Usongo
  • Re: [R-sig-phylo] Rooting trees in R Juan Antonio Balbuena
  • Re: [R-sig-phylo] Rooting trees in R Valentine Usongo
• [R-sig-phylo] modeling discretely plastic traits Jacob Berv
  • Re: [R-sig-phylo] modeling discretely plastic traits David Bapst
• [R-sig-phylo] PhD position in evolutionary biology krzysztofbartoszek
• [R-sig-phylo] dating cladograms in R Fábio Machado
  • Re: [R-sig-phylo] dating cladograms in R Joseph W. Brown
  • Re: [R-sig-phylo] dating cladograms in R Nürk , Nicolai
  • Re: [R-sig-phylo] dating cladograms in R Fábio Machado
• [R-sig-phylo] ace() Warning message:, In sqrt(1/out$hessian) : NaNs produced Juan Antonio Balbuena
  • Re: [R-sig-phylo] ace() Warning message:, In sqrt(1/out$hessian) : NaNs produced Emmanuel Paradis
  • Re: [R-sig-phylo] ace() Warning message:, In sqrt(1/out$hessian) : NaNs produced Juan Antonio Balbuena
• [R-sig-phylo] Error in PGLS Nicolas Brualla
  • Re: [R-sig-phylo] Error in PGLS [email protected]
• [R-sig-phylo] Medusa error Jacob B Landis
• [R-sig-phylo] Extracting a clade for LTT David Buckley
  • Re: [R-sig-phylo] Extracting a clade for LTT Joseph W. Brown
  • Re: [R-sig-phylo] Extracting a clade for LTT Liam J. Revell
• [R-sig-phylo] REST API CIPRES Andreas Kolter
  • Re: [R-sig-phylo] REST API CIPRES François Michonneau
• [R-sig-phylo] problem calculating independent contrasts Patrick Pereira
• [R-sig-phylo] mixed models in phyreg Ivalu Cacho
• [R-sig-phylo] Applying standard error in phylogenetic signal measurement using lambda Chen, Ting-Wen
  • Re: [R-sig-phylo] Applying standard error in phylogenetic signal measurement using lambda Liam J. Revell
• [R-sig-phylo] Bug in ape? Simon Blomberg
  • Re: [R-sig-phylo] Bug in ape? Simon Blomberg
  • Re: [R-sig-phylo] Bug in ape? François Michonneau
• [R-sig-phylo] Graphically comparing multiple trees Vojtěch Zeisek
  • Re: [R-sig-phylo] Graphically comparing multiple trees Jacob Berv
  • Re: [R-sig-phylo] Graphically comparing multiple trees Thibaut Jombart
  • Re: [R-sig-phylo] Graphically comparing multiple trees Vojtěch Zeisek
  • Re: [R-sig-phylo] Graphically comparing multiple trees Liam J. Revell
  • Re: [R-sig-phylo] Graphically comparing multiple trees Klaus Schliep
  • Re: [R-sig-phylo] Graphically comparing multiple trees Vojtěch Zeisek
  • Re: [R-sig-phylo] Graphically comparing multiple trees Klaus Schliep
  • Re: [R-sig-phylo] Graphically comparing multiple trees Vojtěch Zeisek
  • Re: [R-sig-phylo] Graphically comparing multiple trees Liam J. Revell
  • Re: [R-sig-phylo] Graphically comparing multiple trees Vojtěch Zeisek
  • Re: [R-sig-phylo] Graphically comparing multiple trees Vojtěch Zeisek
  • Re: [R-sig-phylo] Graphically comparing multiple trees Liam J. Revell
  • Re: [R-sig-phylo] Graphically comparing multiple trees Vojtěch Zeisek
• [R-sig-phylo] phylip file compression ratios Jacob Berv
  • Re: [R-sig-phylo] phylip file compression ratios Joe Felsenstein
  • Re: [R-sig-phylo] phylip file compression ratios Jacob Berv
• [R-sig-phylo] Average Aminoacid Identity tree with bootstrap support. Is it possible? Salvador Espada Hinojosa
  • Re: [R-sig-phylo] Average Aminoacid Identity tree with bootstrap support. Is it possible? Emmanuel Paradis
  • Re: [R-sig-phylo] Average Aminoacid Identity tree with bootstrap support. Is it possible? Joe Felsenstein
• [R-sig-phylo] computing phylogenetic residuals Jacob Berv
• [R-sig-phylo] Postdoc position: parental care evoluton Isabella Capellini
• Re: [R-sig-phylo] Zero inflated model accounting for Matthews, Luke
• [R-sig-phylo] Zero inflated model accounting for phylogeny Gopal Murali
  • Re: [R-sig-phylo] Zero inflated model accounting for phylogeny Manabu Sakamoto
• [R-sig-phylo] How to test stratification of sampling across tree? Ross Mounce
  • Re: [R-sig-phylo] How to test stratification of sampling across tree? David Bapst
  • Re: [R-sig-phylo] How to test stratification of sampling across tree? Ross Mounce
  • Re: [R-sig-phylo] How to test stratification of sampling across tree? Ross Mounce
  • Re: [R-sig-phylo] How to test stratification of sampling across tree? Brian O'Meara
  • Re: [R-sig-phylo] How to test stratification of sampling across tree? Ross Mounce
• [R-sig-phylo] Workshop: DiversificationRates & Macroevolution Dan Rabosky
• [R-sig-phylo] UK.GeometricMorphometricsUsingRDeanAdams.Jun5-9 Oliver Hooker
• Re: [R-sig-phylo] converting TNT(?) tree to newick tree Eduardo Ascarrunz
  • Re: [R-sig-phylo] converting TNT(?) tree to newick tree Chris Law
• [R-sig-phylo] Plotting uncertainty in continuous ASR Arbuckle, Kevin
  • Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Jacob Berv
  • [R-sig-phylo] FW: Plotting uncertainty in continuous ASR Arbuckle, Kevin
  • Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Liam J. Revell
  • Re: [R-sig-phylo] Plotting uncertainty in continuous ASR David Bapst
  • Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Liam J. Revell
  • Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Liam J. Revell
  • Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Arbuckle, Kevin
  • Re: [R-sig-phylo] Plotting uncertainty in continuous ASR Liam J. Revell
• [R-sig-phylo] phytools densityMap tree paint back to binary state marko . djurakic
  • Re: [R-sig-phylo] phytools densityMap tree paint back to binary state Liam J. Revell
  • Re: [R-sig-phylo] phytools densityMap tree paint back to binary state marko . djurakic
• [R-sig-phylo] UK.CodingDataManageShinyappsRStudioForEvolutionaryBiologists.May15-19 Oliver Hooker
• [R-sig-phylo] distances between the nodes Wierzbinska, Justyna
  • Re: [R-sig-phylo] distances between the nodes Eduardo Ascarrunz
  • Re: [R-sig-phylo] distances between the nodes Klaus Schliep
  • Re: [R-sig-phylo] distances between the nodes Wierzbinska, Justyna
  • Re: [R-sig-phylo] distances between the nodes Klaus Schliep
• [R-sig-phylo] Substitution model for codon alignment Bhuller, Ravneet
• [R-sig-phylo] Negative transition rates in diversitree Miguel.Verdu
• [R-sig-phylo] simulate additive trees based on ultrametric trees Juan Antonio Balbuena
• [R-sig-phylo] MrBayes Branch Lengths in R William Gearty
  • Re: [R-sig-phylo] MrBayes Branch Lengths in R William Gearty
• [R-sig-phylo] Phylogeny, continuous trait and categorical trait mix Alba Frias de diego
• [R-sig-phylo] STATS COURSE.UK.AdvancingInRforEvolutionaryBiologists.24-28April2017 Oliver Hooker
• [R-sig-phylo] Ann: course Mapping Trait Evolution, June 5-9, Barcelona (Spain) Soledad De Esteban-Trivigno
• [R-sig-phylo] REML version of Lynch1991? [email protected]
• [R-sig-phylo] pairwise random effects model Jeff Shi
• [R-sig-phylo] Rooting a tree with a basal polytomy Yan Wong
  • Re: [R-sig-phylo] Rooting a tree with a basal polytomy Emmanuel Paradis
  • Re: [R-sig-phylo] Rooting a tree with a basal polytomy Yan Wong
• [R-sig-phylo] PCM Workshop in Córdoba, Argentina, 1-4 August Liam J. Revell
• [R-sig-phylo] Painting clades in a fan tree with bars Oscar Valverde
  • Re: [R-sig-phylo] Painting clades in a fan tree with bars Liam J. Revell
• [R-sig-phylo] mean phylogenetic distance for subsets of species from a tree Zach Culumber
  • Re: [R-sig-phylo] mean phylogenetic distance for subsets of species from a tree Liam J. Revell
  • Re: [R-sig-phylo] mean phylogenetic distance for subsets of species from a tree Zach Culumber
• [R-sig-phylo] Fwd: Workshop: UWashington.EvolQuantGenetics.Jun5-9 Joe Felsenstein
  • [R-sig-phylo] HKY GTR distances [email protected]
  • Re: [R-sig-phylo] HKY GTR distances Jacob Berv
  • Re: [R-sig-phylo] HKY GTR distances Emmanuel Paradis
  • Re: [R-sig-phylo] HKY GTR distances Joe Felsenstein
  • Re: [R-sig-phylo] HKY GTR distances Klaus Schliep
• [R-sig-phylo] How to incorporate duplicate species data Philip Shirk
  • Re: [R-sig-phylo] How to incorporate duplicate species data Liam J. Revell
  • Re: [R-sig-phylo] How to incorporate duplicate species data Christopher Hamilton
  • Re: [R-sig-phylo] How to incorporate duplicate species data Philip Shirk
• [R-sig-phylo] to log or not to log Jacob Berv
  • Re: [R-sig-phylo] to log or not to log Theodore Garland
  • Re: [R-sig-phylo] to log or not to log Donald Miles
  • Re: [R-sig-phylo] to log or not to log Jacob Berv
• [R-sig-phylo] ape - corMartins Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] ape - corMartins Emmanuel Paradis
  • Re: [R-sig-phylo] ape - corMartins Sergio Ferreira Cardoso
• [R-sig-phylo] Enigmatic error with drop.tip Juan Antonio Balbuena
  • Re: [R-sig-phylo] Enigmatic error with drop.tip Klaus Schliep
  • Re: [R-sig-phylo] Enigmatic error with drop.tip Emmanuel Paradis
  • Re: [R-sig-phylo] Enigmatic error with drop.tip Juan Antonio Balbuena
  • [R-sig-phylo] detect psbA-trnH inversions (and what to do with them) before phylogenetic reconstruction [email protected]
• [R-sig-phylo] chronoMPL/APE Jacqueline Heckenhauer
  • [R-sig-phylo] chronoMPL/APE Juan Antonio Balbuena
  • Re: [R-sig-phylo] chronoMPL/APE Brian O'Meara
• [R-sig-phylo] Amniote Phylogenetic Tree Sergio Ferreira Cardoso
  • Re: [R-sig-phylo] Amniote Phylogenetic Tree François Michonneau
  • Re: [R-sig-phylo] Amniote Phylogenetic Tree Sergio Ferreira Cardoso
• [R-sig-phylo] Plotting character data next to tree in R Katharine Walter
  • Re: [R-sig-phylo] Plotting character data next to tree in R Liam J. Revell
• [R-sig-phylo] Introduction to R and statistics for biologists - CHINA - April2017 Oliver Hooker
  • [R-sig-phylo] Introduction to R and statistics for biologists - CHINA - April2017 Oliver Hooker
• [R-sig-phylo] multi2di fails on multiPhylo objects Yan Wong

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