Hello, sir
Well, for now I just want to estimate the raw distances. But thinking about
coalescents is certainly interesting. Would you have a suggestion for
either ways of thinking?
Thank you,
Pedro
Em 18/02/2016 20:25, "Joe Felsenstein" <j...@gs.washington.edu> escreveu:
>
> Pedro Taucce --
>
>
>> Is there a way to estimate pairwise distances between and within groups of
>> sequences (in my case, each group is a species with lots of individuals)?
>> I
>> used to do it with MEGA, but now I use Linux only and MEGA isn't getting
>> along with it.
>>
>> The closest way I figured out is the function dist.dna from the ape
>> package. But I think it does not estimate distances between groups.
>>
>
> You want to use distances between groups? But you don't want to think
> about coalescents?
>
> J.F.
> ----
> Joe Felsenstein j...@gs.washington.edu
> Department of Genome Sciences and Department of Biology,
> University of Washington, Box 355065, Seattle, WA 98195-5065 USA
>
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