Pedro Taucce --
> Is there a way to estimate pairwise distances between and within groups of
> sequences (in my case, each group is a species with lots of individuals)? I
> used to do it with MEGA, but now I use Linux only and MEGA isn't getting
> along with it.
>
> The closest way I figured out is the function dist.dna from the ape
> package. But I think it does not estimate distances between groups.
>
You want to use distances between groups? But you don't want to think
about coalescents?
J.F.
----
Joe Felsenstein j...@gs.washington.edu
Department of Genome Sciences and Department of Biology,
University of Washington, Box 355065, Seattle, WA 98195-5065 USA
[[alternative HTML version deleted]]
_______________________________________________
R-sig-phylo mailing list - R-sig-phylo@r-project.org
https://stat.ethz.ch/mailman/listinfo/r-sig-phylo
Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
