Hi, PAUP* calculates maximum agreement trees. cheers, Mark On Mon, Dec 21, 2015 at 9:42 AM, Ross Mounce <ross.mou...@gmail.com> wrote: > I'd like to compute a maximum agreement subtree (MAST) from two large > (2269 taxa) unrooted, non-binary trees, each of identical taxa. It's > simply a comparison of a reference tree to a computed tree. > > The data is here as simple Newick, no branch lengths: > https://gist.github.com/rossmounce/faf85ee4ea05b79a3d3d > > Is there anything in R that can compute the MAST for two large trees? > > It seems like if anything can do it, it would be Dendroscope but > despite a dazzling array of options I can't seem to find MAST. Non-R > solutions also welcome. > > > Thanks, > > Ross > > > -- > -- > -/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/-/- > Ross Mounce, PhD > Dept. of Plant Sciences, University of Cambridge > www.rossmounce.co.uk > > _______________________________________________ > R-sig-phylo mailing list - R-sig-phylo@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-phylo > Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
-- Mark Holder mthol...@gmail.com mthol...@ku.edu http://phylo.bio.ku.edu/mark-holder ============================================== Department of Ecology and Evolutionary Biology University of Kansas 6031 Haworth Hall 1200 Sunnyside Avenue Lawrence, Kansas 66045 lab phone: 785.864.5789 fax (shared): 785.864.5860 _______________________________________________ R-sig-phylo mailing list - R-sig-phylo@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-phylo Searchable archive at http://www.mail-archive.com/r-sig-phylo@r-project.org/
