Hi,
Just installed rgl and I get the same crash and error message from the original
post below, running R from the CLI.
If I run R from within ESS (what I normally use), I get:
Process R abort trap: 6 at Mon Aug 3 09:15:32 2020
If I run R from R.app (the default macOS GUI), the command runs fine and I get
the graphic.
I am running R 4.0.2 (2020-06-22) on macOS 10.15.6.
R was cleanly installed, and XQuartz (2.7.11) was updated afterwards.
Regards,
Marc Schwartz
> On Aug 3, 2020, at 9:05 AM, Duncan Murdoch <murdoch.dun...@gmail.com> wrote:
>
> I just got a message from someone else using Catalina 10.15.5 who still gets
> a crash from
>
> library(rgl)
> plot(1:10)
>
> I don't have Catalina, and haven't seen it. Has anyone else?
>
> Duncan Murdoch
>
> On 31/05/2020 4:44 p.m., Richard M. Heiberger wrote:
>> I upgraded last night to Catalina 10.15.5 (19F96).
>> The crash has gone away and that example now works normally.
>> On Fri, May 29, 2020 at 3:25 PM Richard M. Heiberger <r...@temple.edu> wrote:
>>>
>>> my 12:35 email and the attached tmp.txt are from the Terminal.app,
>>> No emacs/ESS involved.
>>>
>>> On Fri, May 29, 2020 at 3:13 PM Duncan Murdoch <murdoch.dun...@gmail.com>
>>> wrote:
>>>>
>>>> On 29/05/2020 2:21 p.m., Richard M. Heiberger wrote:
>>>>> I attempted to update xquartz when I updated to Catalina, and the same
>>>>> number is still the current version number.
>>>>>
>>>>> Here is a related issue, attached tmp2.txt is the R transcript.
>>>>> The interesting thing here is that rgl.quit() prevents rgl from being
>>>>> reattached.
>>>>
>>>> Generally speaking rgl doesn't want to be reloaded in the same R
>>>> session: detaching it doesn't clean up everything. That's not
>>>> something that I'd put any priority on fixing, whereas I would look at
>>>> the problems you're having on startup if I could reproduce them.
>>>>
>>>> I wonder if ESS is involved somehow: your sessionInfo listed ESSR on
>>>> the search list. Do you have the same issues with plain R from the
>>>> console, or R.app?
>>>>
>>>>> Is there an rgl equivalent for dev.cur()?
>>>>
>>>> There's rgl.cur(). rgl only supports two kinds of devices: on a Mac or
>>>> Linux they'd be displayed as glX or null. Windows also supports the
>>>> null device (which doesn't display anything), and a different one to
>>>> display within R: I forget how the name is displayed.
>>>>
>>>> It might be that you'll need to set options(rgl.useNULL) before starting
>>>> rgl, and only use the null device. It won't display anything in R, but
>>>> allows you to call rglwidget() for a display in a browser.
>>>>
>>>> Duncan Murdoch
>>>>
>>>>> On Fri, May 29, 2020 at 1:51 PM Duncan Murdoch <murdoch.dun...@gmail.com>
>>>>> wrote:
>>>>>>
>>>>>> On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote:
>>>>>>> I have the same Xquartz as you.
>>>>>>
>>>>>> I'd guess it should be updated. Generally XQuartz needs updates with
>>>>>> every MacOS release, and your 10.15.4 is two releases further along than
>>>>>> my 10.13.6.
>>>>>>
>>>>>>> I have rgl-0.100.50 from CRAN
>>>>>>
>>>>>> You could update that, but I doubt if it would make any difference.
>>>>>>
>>>>>>> Apple is macOS Catalina, Version 10.15.4
>>>>>>> Do you need hardware information?
>>>>>>> MacBpok Air (13 -inch, Mid 2012)
>>>>>>> Processor 2GHz Dual-Core Intel Core i7
>>>>>>> Memory 8 GB 1600 MHz DDR3
>>>>>>> Graphics Intel HD Graphics 4000 1536 MB
>>>>>>
>>>>>> I think the XQuartz issue is most likely to help, but if it doesn't, I'm
>>>>>> not sure what I could suggest: I don't have Catalina.
>>>>>>
>>>>>> Duncan Murdoch
>>>>>>>
>>>>>>>
>>>>>>> from the Terminal App:
>>>>>>> The Apple Crash Report is in the attached tmp.txt
>>>>>>> I didn't send it to Apple.
>>>>>>>
>>>>>>> R version 4.0.0 (2020-04-24) -- "Arbor Day"
>>>>>>>
>>>>>>> Copyright (C) 2020 The R Foundation for Statistical Computing
>>>>>>>
>>>>>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>>>>>
>>>>>>>
>>>>>>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>>>>>>>
>>>>>>> You are welcome to redistribute it under certain conditions.
>>>>>>>
>>>>>>> Type 'license()' or 'licence()' for distribution details.
>>>>>>>
>>>>>>>
>>>>>>> Natural language support but running in an English locale
>>>>>>>
>>>>>>>
>>>>>>> R is a collaborative project with many contributors.
>>>>>>>
>>>>>>> Type 'contributors()' for more information and
>>>>>>>
>>>>>>> 'citation()' on how to cite R or R packages in publications.
>>>>>>>
>>>>>>>
>>>>>>> Type 'demo()' for some demos, 'help()' for on-line help, or
>>>>>>>
>>>>>>> 'help.start()' for an HTML browser interface to help.
>>>>>>>
>>>>>>> Type 'q()' to quit R.
>>>>>>>
>>>>>>>
>>>>>>>> library(rgl)
>>>>>>>
>>>>>>>> plot(1:10)
>>>>>>>
>>>>>>>> 2020-05-29 12:30:00.536 R[24961:3275889] *** Assertion failure in BOOL
>>>>>>>> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
>>>>>>>>
>>>>>>>> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
>>>>>>>
>>>>>>> 2020-05-29 12:30:00.543 R[24961:3275889] *** Terminating app due to
>>>>>>> uncaught exception 'NSInternalInconsistencyException', reason:
>>>>>>> 'NSScreen reconfig must only happen on the main thread.'
>>>>>>>
>>>>>>> *** First throw call stack:
>>>>>>>
>>>>>>> (
>>>>>>>
>>>>>>> 0 CoreFoundation 0x00007fff371698d7
>>>>>>> __exceptionPreprocess + 250
>>>>>>>
>>>>>>> 1 libobjc.A.dylib 0x00007fff6ff47a9e
>>>>>>> objc_exception_throw + 48
>>>>>>>
>>>>>>> 2 CoreFoundation 0x00007fff37192bb0
>>>>>>> +[NSException raise:format:arguments:] + 88
>>>>>>>
>>>>>>> 3 Foundation 0x00007fff398de456
>>>>>>> -[NSAssertionHandler
>>>>>>> handleFailureInFunction:file:lineNumber:description:] + 166
>>>>>>>
>>>>>>> 4 AppKit 0x00007fff34503083
>>>>>>> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
>>>>>>> 361
>>>>>>>
>>>>>>> 5 AppKit 0x00007fff34e4bda8
>>>>>>> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
>>>>>>>
>>>>>>> 6 AppKit 0x00007fff34502c85
>>>>>>> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
>>>>>>>
>>>>>>> 7 AppKit 0x00007fff345024dc
>>>>>>> _NSCGSDockMessageReceive + 268
>>>>>>>
>>>>>>> 8 HIToolbox 0x00007fff35d34a3c
>>>>>>> _ZL12DockCallbackjjPvS_ + 1987
>>>>>>>
>>>>>>> 9 HIServices 0x00007fff3539c8ec
>>>>>>> dockClientNotificationProc + 217
>>>>>>>
>>>>>>> 10 SkyLight 0x00007fff6626f174
>>>>>>> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
>>>>>>> 1002
>>>>>>>
>>>>>>> 11 SkyLight 0x00007fff6626de71
>>>>>>> CGSSnarfAndDispatchDatagrams + 1671
>>>>>>>
>>>>>>> 12 SkyLight 0x00007fff6649d5a5
>>>>>>> SLSGetNextEventRecordInternal + 83
>>>>>>>
>>>>>>> 13 SkyLight 0x00007fff6633bfbe
>>>>>>> SLEventCreateNextEvent + 136
>>>>>>>
>>>>>>> 14 libXplugin.1.dylib 0x000000010686df0c
>>>>>>> ___xp_init_service_cg_event_port_block_invoke + 104
>>>>>>>
>>>>>>> 15 libdispatch.dylib 0x00007fff7108d658
>>>>>>> _dispatch_client_callout + 8
>>>>>>>
>>>>>>> 16 libdispatch.dylib 0x00007fff7108f818
>>>>>>> _dispatch_continuation_pop + 414
>>>>>>>
>>>>>>> 17 libdispatch.dylib 0x00007fff7109f4be
>>>>>>> _dispatch_source_invoke + 2084
>>>>>>>
>>>>>>> 18 libdispatch.dylib 0x00007fff71092af6
>>>>>>> _dispatch_lane_serial_drain + 263
>>>>>>>
>>>>>>> 19 libdispatch.dylib 0x00007fff710935d6
>>>>>>> _dispatch_lane_invoke + 363
>>>>>>>
>>>>>>> 20 libdispatch.dylib 0x00007fff7109cc09
>>>>>>> _dispatch_workloop_worker_thread + 596
>>>>>>>
>>>>>>> 21 libsystem_pthread.dylib 0x00007fff712eba3d
>>>>>>> _pthread_wqthread + 290
>>>>>>>
>>>>>>> 22 libsystem_pthread.dylib 0x00007fff712eab77
>>>>>>> start_wqthread + 15
>>>>>>>
>>>>>>> )
>>>>>>>
>>>>>>> libc++abi.dylib: terminating with uncaught exception of type NSException
>>>>>>>
>>>>>>> zsh: abort R
>>>>>>>
>>>>>>> rmh@rmhs-Air ~ %
>>>>>>>
>>>>>>>
>>>>>>> On Fri, May 29, 2020 at 12:16 PM Duncan Murdoch
>>>>>>> <murdoch.dun...@gmail.com> wrote:
>>>>>>>>
>>>>>>>> I'm not seeing that with R-patched r78557, run from the console. I'm
>>>>>>>> not sure I have the same MacOS version as you (R prints the same thing,
>>>>>>>> Apple says High Sierra 10.13.6). I tried with the CRAN binary of rgl
>>>>>>>> 0.100.54. I'd guess the version of XQuartz may be important: I'm not
>>>>>>>> seeing rgl in the call stack, but libXplugin is there. Mine is
>>>>>>>> "XQuartz
>>>>>>>> 2.7.11 (xorg-server 1.18.4)".
>>>>>>>>
>>>>>>>> Duncan Murdoch
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote:
>>>>>>>>> R version 4.0.0 (2020-04-24) -- "Arbor Day"
>>>>>>>>> Copyright (C) 2020 The R Foundation for Statistical Computing
>>>>>>>>> Platform: x86_64-apple-darwin17.0 (64-bit)
>>>>>>>>>
>>>>>>>>> R is free software and comes with ABSOLUTELY NO WARRANTY.
>>>>>>>>> You are welcome to redistribute it under certain conditions.
>>>>>>>>> Type 'license()' or 'licence()' for distribution details.
>>>>>>>>>
>>>>>>>>> Natural language support but running in an English locale
>>>>>>>>>
>>>>>>>>> R is a collaborative project with many contributors.
>>>>>>>>> Type 'contributors()' for more information and
>>>>>>>>> 'citation()' on how to cite R or R packages in publications.
>>>>>>>>>
>>>>>>>>> Type 'demo()' for some demos, 'help()' for on-line help, or
>>>>>>>>> 'help.start()' for an HTML browser interface to help.
>>>>>>>>> Type 'q()' to quit R.
>>>>>>>>>
>>>>>>>>>> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager')))
>>>>>>>>>> options(pager='cat') # rather take the ESS one
>>>>>>>>>> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
>>>>>>>>>> show.error.locations=TRUE)
>>>>>>>>>> version
>>>>>>>>> _
>>>>>>>>> platform x86_64-apple-darwin17.0
>>>>>>>>> arch x86_64
>>>>>>>>> os darwin17.0
>>>>>>>>> system x86_64, darwin17.0
>>>>>>>>> status
>>>>>>>>> major 4
>>>>>>>>> minor 0.0
>>>>>>>>> year 2020
>>>>>>>>> month 04
>>>>>>>>> day 24
>>>>>>>>> svn rev 78286
>>>>>>>>> language R
>>>>>>>>> version.string R version 4.0.0 (2020-04-24)
>>>>>>>>> nickname Arbor Day
>>>>>>>>>>
>>>>>>>>>> library(rgl)
>>>>>>>>>> plot(1:10)
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> Process R abort trap: 6 at Fri May 29 11:32:59 2020
>>>>>>>>> 2020-05-29 11:32:59.542 R[24448:3255600] *** Assertion failure in BOOL
>>>>>>>>> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
>>>>>>>>> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
>>>>>>>>> 2020-05-29 11:32:59.560 R[24448:3255600] *** Terminating app due to
>>>>>>>>> uncaught exception 'NSInternalInconsistencyException', reason:
>>>>>>>>> 'NSScreen reconfig must only happen on the main thread.'
>>>>>>>>> *** First throw call stack:
>>>>>>>>> (
>>>>>>>>> 0 CoreFoundation 0x00007fff371698d7
>>>>>>>>> __exceptionPreprocess + 250
>>>>>>>>> 1 libobjc.A.dylib 0x00007fff6ff47a9e
>>>>>>>>> objc_exception_throw + 48
>>>>>>>>> 2 CoreFoundation 0x00007fff37192bb0
>>>>>>>>> +[NSException raise:format:arguments:] + 88
>>>>>>>>> 3 Foundation 0x00007fff398de456
>>>>>>>>> -[NSAssertionHandler
>>>>>>>>> handleFailureInFunction:file:lineNumber:description:] + 166
>>>>>>>>> 4 AppKit 0x00007fff34503083
>>>>>>>>> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
>>>>>>>>> 361
>>>>>>>>> 5 AppKit 0x00007fff34e4bda8
>>>>>>>>> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
>>>>>>>>> 6 AppKit 0x00007fff34502c85
>>>>>>>>> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
>>>>>>>>> 7 AppKit 0x00007fff345024dc
>>>>>>>>> _NSCGSDockMessageReceive + 268
>>>>>>>>> 8 HIToolbox 0x00007fff35d34a3c
>>>>>>>>> _ZL12DockCallbackjjPvS_ + 1987
>>>>>>>>> 9 HIServices 0x00007fff3539c8ec
>>>>>>>>> dockClientNotificationProc + 217
>>>>>>>>> 10 SkyLight 0x00007fff6626f174
>>>>>>>>> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
>>>>>>>>> 1002
>>>>>>>>> 11 SkyLight 0x00007fff6626de71
>>>>>>>>> CGSSnarfAndDispatchDatagrams + 1671
>>>>>>>>> 12 SkyLight 0x00007fff6649d5a5
>>>>>>>>> SLSGetNextEventRecordInternal + 83
>>>>>>>>> 13 SkyLight 0x00007fff6633bfbe
>>>>>>>>> SLEventCreateNextEvent + 136
>>>>>>>>> 14 libXplugin.1.dylib 0x000000010ffa5f0c
>>>>>>>>> ___xp_init_service_cg_event_port_block_invoke + 104
>>>>>>>>> 15 libdispatch.dylib 0x00007fff7108d658
>>>>>>>>> _dispatch_client_callout + 8
>>>>>>>>> 16 libdispatch.dylib 0x00007fff7108f818
>>>>>>>>> _dispatch_continuation_pop + 414
>>>>>>>>> 17 libdispatch.dylib 0x00007fff7109f4be
>>>>>>>>> _dispatch_source_invoke + 2084
>>>>>>>>> 18 libdispatch.dylib 0x00007fff71092af6
>>>>>>>>> _dispatch_lane_serial_drain + 263
>>>>>>>>> 19 libdispatch.dylib 0x00007fff710935d6
>>>>>>>>> _dispatch_lane_invoke + 363
>>>>>>>>> 20 libdispatch.dylib 0x00007fff7109cc09
>>>>>>>>> _dispatch_workloop_worker_thread + 596
>>>>>>>>> 21 libsystem_pthread.dylib 0x00007fff712eba3d
>>>>>>>>> _pthread_wqthread + 290
>>>>>>>>> 22 libsystem_pthread.dylib 0x00007fff712eab77
>>>>>>>>> start_wqthread + 15
>>>>>>>>> )
>>>>>>>>> libc++abi.dylib: terminating with uncaught exception of type
>>>>>>>>> NSException
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> R-SIG-Mac mailing list
>>>>>>>>> R-SIG-Mac@r-project.org
>>>>>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>>>>>>
>>>>>>>>
>>>>>>
>>>>
>
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