I attempted to update xquartz when I updated to Catalina, and the same
number is still the current version number.
Here is a related issue, attached tmp2.txt is the R transcript.
The interesting thing here is that rgl.quit() prevents rgl from being
reattached.
Is there an rgl equivalent for dev.cur()?
On Fri, May 29, 2020 at 1:51 PM Duncan Murdoch <murdoch.dun...@gmail.com> wrote:
>
> On 29/05/2020 12:35 p.m., Richard M. Heiberger wrote:
> > I have the same Xquartz as you.
>
> I'd guess it should be updated. Generally XQuartz needs updates with
> every MacOS release, and your 10.15.4 is two releases further along than
> my 10.13.6.
>
> > I have rgl-0.100.50 from CRAN
>
> You could update that, but I doubt if it would make any difference.
>
> > Apple is macOS Catalina, Version 10.15.4
> > Do you need hardware information?
> > MacBpok Air (13 -inch, Mid 2012)
> > Processor 2GHz Dual-Core Intel Core i7
> > Memory 8 GB 1600 MHz DDR3
> > Graphics Intel HD Graphics 4000 1536 MB
>
> I think the XQuartz issue is most likely to help, but if it doesn't, I'm
> not sure what I could suggest: I don't have Catalina.
>
> Duncan Murdoch
> >
> >
> > from the Terminal App:
> > The Apple Crash Report is in the attached tmp.txt
> > I didn't send it to Apple.
> >
> > R version 4.0.0 (2020-04-24) -- "Arbor Day"
> >
> > Copyright (C) 2020 The R Foundation for Statistical Computing
> >
> > Platform: x86_64-apple-darwin17.0 (64-bit)
> >
> >
> > R is free software and comes with ABSOLUTELY NO WARRANTY.
> >
> > You are welcome to redistribute it under certain conditions.
> >
> > Type 'license()' or 'licence()' for distribution details.
> >
> >
> > Natural language support but running in an English locale
> >
> >
> > R is a collaborative project with many contributors.
> >
> > Type 'contributors()' for more information and
> >
> > 'citation()' on how to cite R or R packages in publications.
> >
> >
> > Type 'demo()' for some demos, 'help()' for on-line help, or
> >
> > 'help.start()' for an HTML browser interface to help.
> >
> > Type 'q()' to quit R.
> >
> >
> >> library(rgl)
> >
> >> plot(1:10)
> >
> >> 2020-05-29 12:30:00.536 R[24961:3275889] *** Assertion failure in BOOL
> >> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
> >>
> >> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
> >
> > 2020-05-29 12:30:00.543 R[24961:3275889] *** Terminating app due to
> > uncaught exception 'NSInternalInconsistencyException', reason:
> > 'NSScreen reconfig must only happen on the main thread.'
> >
> > *** First throw call stack:
> >
> > (
> >
> > 0 CoreFoundation 0x00007fff371698d7
> > __exceptionPreprocess + 250
> >
> > 1 libobjc.A.dylib 0x00007fff6ff47a9e
> > objc_exception_throw + 48
> >
> > 2 CoreFoundation 0x00007fff37192bb0
> > +[NSException raise:format:arguments:] + 88
> >
> > 3 Foundation 0x00007fff398de456
> > -[NSAssertionHandler
> > handleFailureInFunction:file:lineNumber:description:] + 166
> >
> > 4 AppKit 0x00007fff34503083
> > +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> > 361
> >
> > 5 AppKit 0x00007fff34e4bda8
> > _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
> >
> > 6 AppKit 0x00007fff34502c85
> > -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
> >
> > 7 AppKit 0x00007fff345024dc
> > _NSCGSDockMessageReceive + 268
> >
> > 8 HIToolbox 0x00007fff35d34a3c
> > _ZL12DockCallbackjjPvS_ + 1987
> >
> > 9 HIServices 0x00007fff3539c8ec
> > dockClientNotificationProc + 217
> >
> > 10 SkyLight 0x00007fff6626f174
> > _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> > 1002
> >
> > 11 SkyLight 0x00007fff6626de71
> > CGSSnarfAndDispatchDatagrams + 1671
> >
> > 12 SkyLight 0x00007fff6649d5a5
> > SLSGetNextEventRecordInternal + 83
> >
> > 13 SkyLight 0x00007fff6633bfbe
> > SLEventCreateNextEvent + 136
> >
> > 14 libXplugin.1.dylib 0x000000010686df0c
> > ___xp_init_service_cg_event_port_block_invoke + 104
> >
> > 15 libdispatch.dylib 0x00007fff7108d658
> > _dispatch_client_callout + 8
> >
> > 16 libdispatch.dylib 0x00007fff7108f818
> > _dispatch_continuation_pop + 414
> >
> > 17 libdispatch.dylib 0x00007fff7109f4be
> > _dispatch_source_invoke + 2084
> >
> > 18 libdispatch.dylib 0x00007fff71092af6
> > _dispatch_lane_serial_drain + 263
> >
> > 19 libdispatch.dylib 0x00007fff710935d6
> > _dispatch_lane_invoke + 363
> >
> > 20 libdispatch.dylib 0x00007fff7109cc09
> > _dispatch_workloop_worker_thread + 596
> >
> > 21 libsystem_pthread.dylib 0x00007fff712eba3d
> > _pthread_wqthread + 290
> >
> > 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread +
> > 15
> >
> > )
> >
> > libc++abi.dylib: terminating with uncaught exception of type NSException
> >
> > zsh: abort R
> >
> > rmh@rmhs-Air ~ %
> >
> >
> > On Fri, May 29, 2020 at 12:16 PM Duncan Murdoch
> > <murdoch.dun...@gmail.com> wrote:
> >>
> >> I'm not seeing that with R-patched r78557, run from the console. I'm
> >> not sure I have the same MacOS version as you (R prints the same thing,
> >> Apple says High Sierra 10.13.6). I tried with the CRAN binary of rgl
> >> 0.100.54. I'd guess the version of XQuartz may be important: I'm not
> >> seeing rgl in the call stack, but libXplugin is there. Mine is "XQuartz
> >> 2.7.11 (xorg-server 1.18.4)".
> >>
> >> Duncan Murdoch
> >>
> >>
> >>
> >> On 29/05/2020 11:44 a.m., Richard M. Heiberger wrote:
> >>> R version 4.0.0 (2020-04-24) -- "Arbor Day"
> >>> Copyright (C) 2020 The R Foundation for Statistical Computing
> >>> Platform: x86_64-apple-darwin17.0 (64-bit)
> >>>
> >>> R is free software and comes with ABSOLUTELY NO WARRANTY.
> >>> You are welcome to redistribute it under certain conditions.
> >>> Type 'license()' or 'licence()' for distribution details.
> >>>
> >>> Natural language support but running in an English locale
> >>>
> >>> R is a collaborative project with many contributors.
> >>> Type 'contributors()' for more information and
> >>> 'citation()' on how to cite R or R packages in publications.
> >>>
> >>> Type 'demo()' for some demos, 'help()' for on-line help, or
> >>> 'help.start()' for an HTML browser interface to help.
> >>> Type 'q()' to quit R.
> >>>
> >>>> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager')))
> >>>> options(pager='cat') # rather take the ESS one
> >>>> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
> >>>> show.error.locations=TRUE)
> >>>> version
> >>> _
> >>> platform x86_64-apple-darwin17.0
> >>> arch x86_64
> >>> os darwin17.0
> >>> system x86_64, darwin17.0
> >>> status
> >>> major 4
> >>> minor 0.0
> >>> year 2020
> >>> month 04
> >>> day 24
> >>> svn rev 78286
> >>> language R
> >>> version.string R version 4.0.0 (2020-04-24)
> >>> nickname Arbor Day
> >>>>
> >>>> library(rgl)
> >>>> plot(1:10)
> >>>>
> >>>
> >>> Process R abort trap: 6 at Fri May 29 11:32:59 2020
> >>> 2020-05-29 11:32:59.542 R[24448:3255600] *** Assertion failure in BOOL
> >>> NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
> >>> /AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
> >>> 2020-05-29 11:32:59.560 R[24448:3255600] *** Terminating app due to
> >>> uncaught exception 'NSInternalInconsistencyException', reason:
> >>> 'NSScreen reconfig must only happen on the main thread.'
> >>> *** First throw call stack:
> >>> (
> >>> 0 CoreFoundation 0x00007fff371698d7
> >>> __exceptionPreprocess + 250
> >>> 1 libobjc.A.dylib 0x00007fff6ff47a9e
> >>> objc_exception_throw + 48
> >>> 2 CoreFoundation 0x00007fff37192bb0
> >>> +[NSException raise:format:arguments:] + 88
> >>> 3 Foundation 0x00007fff398de456
> >>> -[NSAssertionHandler
> >>> handleFailureInFunction:file:lineNumber:description:] + 166
> >>> 4 AppKit 0x00007fff34503083
> >>> +[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] +
> >>> 361
> >>> 5 AppKit 0x00007fff34e4bda8
> >>> _NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
> >>> 6 AppKit 0x00007fff34502c85
> >>> -[NSApplication(ScreenHandling) _reactToDockChanged] + 144
> >>> 7 AppKit 0x00007fff345024dc
> >>> _NSCGSDockMessageReceive + 268
> >>> 8 HIToolbox 0x00007fff35d34a3c
> >>> _ZL12DockCallbackjjPvS_ + 1987
> >>> 9 HIServices 0x00007fff3539c8ec
> >>> dockClientNotificationProc + 217
> >>> 10 SkyLight 0x00007fff6626f174
> >>> _ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ +
> >>> 1002
> >>> 11 SkyLight 0x00007fff6626de71
> >>> CGSSnarfAndDispatchDatagrams + 1671
> >>> 12 SkyLight 0x00007fff6649d5a5
> >>> SLSGetNextEventRecordInternal + 83
> >>> 13 SkyLight 0x00007fff6633bfbe
> >>> SLEventCreateNextEvent + 136
> >>> 14 libXplugin.1.dylib 0x000000010ffa5f0c
> >>> ___xp_init_service_cg_event_port_block_invoke + 104
> >>> 15 libdispatch.dylib 0x00007fff7108d658
> >>> _dispatch_client_callout + 8
> >>> 16 libdispatch.dylib 0x00007fff7108f818
> >>> _dispatch_continuation_pop + 414
> >>> 17 libdispatch.dylib 0x00007fff7109f4be
> >>> _dispatch_source_invoke + 2084
> >>> 18 libdispatch.dylib 0x00007fff71092af6
> >>> _dispatch_lane_serial_drain + 263
> >>> 19 libdispatch.dylib 0x00007fff710935d6
> >>> _dispatch_lane_invoke + 363
> >>> 20 libdispatch.dylib 0x00007fff7109cc09
> >>> _dispatch_workloop_worker_thread + 596
> >>> 21 libsystem_pthread.dylib 0x00007fff712eba3d
> >>> _pthread_wqthread + 290
> >>> 22 libsystem_pthread.dylib 0x00007fff712eab77 start_wqthread
> >>> + 15
> >>> )
> >>> libc++abi.dylib: terminating with uncaught exception of type NSException
> >>>
> >>> _______________________________________________
> >>> R-SIG-Mac mailing list
> >>> R-SIG-Mac@r-project.org
> >>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >>>
> >>
>
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> if(identical(getOption('pager'), file.path(R.home('bin'), 'pager')))
> options(pager='cat') # rather take the ESS one
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
> show.error.locations=TRUE)
> search()
[1] ".GlobalEnv" "ESSR" "package:stats"
[4] "package:graphics" "package:grDevices" "package:utils"
[7] "package:datasets" "package:methods" "Autoloads"
[10] "package:base"
> library(rgl)
> search()
[1] ".GlobalEnv" "package:rgl" "ESSR"
[4] "package:stats" "package:graphics" "package:grDevices"
[7] "package:utils" "package:datasets" "package:methods"
[10] "Autoloads" "package:base"
> dev.cur()
null device
1
> plot3d(1:5,6:8,9:12)
> ## plot appears
> dev.cur()
null device
1
> plot(1:10)
>
Process R:2 abort trap: 6 at Fri May 29 14:01:31 2020
2020-05-29 14:01:31.083 R[25619:3307403] *** Assertion failure in BOOL
NSScreenConfigurationInvalidateIfNeededForReason(_NSScreenConfigurationUpdateReason)(),
/AppleInternal/BuildRoot/Library/Caches/com.apple.xbs/Sources/AppKit/AppKit-1894.40.150/AppKit.subproj/NSScreenConfiguration.m:473
2020-05-29 14:01:31.214 R[25619:3307403] *** Terminating app due to uncaught
exception 'NSInternalInconsistencyException', reason: 'NSScreen reconfig must
only happen on the main thread.'
*** First throw call stack:
(
0 CoreFoundation 0x00007fff371698d7
__exceptionPreprocess + 250
1 libobjc.A.dylib 0x00007fff6ff47a9e
objc_exception_throw + 48
2 CoreFoundation 0x00007fff37192bb0
+[NSException raise:format:arguments:] + 88
3 Foundation 0x00007fff398de456
-[NSAssertionHandler handleFailureInFunction:file:lineNumber:description:] + 166
4 AppKit 0x00007fff34503083
+[_NSScreenConfiguration invalidateConfigurationIfNeededForReason:] + 361
5 AppKit 0x00007fff34e4bda8
_NSApplicationInvalidateScreenConfigurationMaybeIfNeeded + 243
6 AppKit 0x00007fff34502c85
-[NSApplication(ScreenHandling) _reactToDockChanged] + 144
7 AppKit 0x00007fff345024dc
_NSCGSDockMessageReceive + 268
8 HIToolbox 0x00007fff35d34a3c
_ZL12DockCallbackjjPvS_ + 1987
9 HIServices 0x00007fff3539c8ec
dockClientNotificationProc + 217
10 SkyLight 0x00007fff6626f174
_ZN12_GLOBAL__N_123notify_datagram_handlerEj15CGSDatagramTypePvmS1_ + 1002
11 SkyLight 0x00007fff6626de71
CGSSnarfAndDispatchDatagrams + 1671
12 SkyLight 0x00007fff6649d5a5
SLSGetNextEventRecordInternal + 83
13 SkyLight 0x00007fff6633bfbe
SLEventCreateNextEvent + 136
14 libXplugin.1.dylib 0x00000001054c7f0c
___xp_init_service_cg_event_port_block_invoke + 104
15 libdispatch.dylib 0x00007fff7108d658
_dispatch_client_callout + 8
16 libdispatch.dylib 0x00007fff7108f818
_dispatch_continuation_pop + 414
17 libdispatch.dylib 0x00007fff7109f4be
_dispatch_source_invoke + 2084
18 libdispatch.dylib 0x00007fff71092af6
_dispatch_lane_serial_drain + 263
19 libdispatch.dylib 0x00007fff710935d6
_dispatch_lane_invoke + 363
20 libdispatch.dylib 0x00007fff7109cc09
_dispatch_workloop_worker_thread + 596
21 libsystem_pthread.dylib 0x00007fff712eba3d
_pthread_wqthread + 290
22 libsystem_pthread.dylib 0x00007fff712eab77
start_wqthread + 15
)
libc++abi.dylib: terminating with uncaught exception of type NSException
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> > if(identical(getOption('pager'), file.path(R.home('bin'), 'pager')))
> > options(pager='cat') # rather take the ESS one
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
> show.error.locations=TRUE)
> library(rgl)
> plot3d(1:5,6:8,9:12)
> search()
[1] ".GlobalEnv" "package:rgl" "ESSR"
[4] "package:stats" "package:graphics" "package:grDevices"
[7] "package:utils" "package:datasets" "package:methods"
[10] "Autoloads" "package:base"
> rgl.quit()
> ## device vanished
> search()
[1] ".GlobalEnv" "ESSR" "package:stats"
[4] "package:graphics" "package:grDevices" "package:utils"
[7] "package:datasets" "package:methods" "Autoloads"
[10] "package:base"
> ## rgl not in search list
> library(rgl)
Selection: 1
Process R:2 segmentation fault: 11 at Fri May 29 14:04:00 2020
R version 4.0.0 (2020-04-24) -- "Arbor Day"
Copyright (C) 2020 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> > if(identical(getOption('pager'), file.path(R.home('bin'), 'pager')))
> > options(pager='cat') # rather take the ESS one
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
> show.error.locations=TRUE)
> library(rgl)
> search()
[1] ".GlobalEnv" "package:rgl" "ESSR"
[4] "package:stats" "package:graphics" "package:grDevices"
[7] "package:utils" "package:datasets" "package:methods"
[10] "Autoloads" "package:base"
> plot3d(1:5,6:8,9:12)
> rgl.quit()
> search()
[1] ".GlobalEnv" "ESSR" "package:stats"
[4] "package:graphics" "package:grDevices" "package:utils"
[7] "package:datasets" "package:methods" "Autoloads"
[10] "package:base"
> library(rgl)
Selection: 0
Selection: 0
Selection: 1
Process R:2 segmentation fault: 11 at Fri May 29 14:06:01 2020
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