Roy, thanks for this! Your insight explains a great deal of my
problems. And indeed I see a whole bunch of PATH additions which were
created by anaconda (these are in .bash_profile, certainly not put
there by me!).
Just to clarify, I'm not using anaconda by choice, it seems to have
been installed inadvertently.
stop press: configure works! Thanks!
Best wishes
Robin
hankin.ro...@gmail.com
hankin.ro...@gmail.com
On Thu, Feb 28, 2019 at 2:47 PM Roy Mendelssohn - NOAA Federal via
R-SIG-Mac <r-sig-mac@r-project.org> wrote:
>
> Anaconda adds code to the end of your ,.profile that can really play havoc
> with paths in other programs/settings - and off I remember correctly it puts
> the changes at the front of your $PATH.. I moved that code in .profile to a
> separate file. When I want anaconda, I just source the file. Makes
> problems such as that described much less likely. If you are using iTerm2
> or the like, then you can easily have a tab with the Anaconda paths and the
> rest of the tabs the more "usual" paths.
>
> HTH,
>
> -Roy
>
>
> > On Feb 27, 2019, at 5:32 PM, Simon Urbanek <simon.urba...@r-project.org>
> > wrote:
> >
> > That's anaconda - they don't include paths which is why it breaks
> > everything until you insert a manual override via DYLD_LIBRARY_PATH. See
> > Robin's e-mail he is NOT using the system curl, but rather a custom version
> > from anaconda ("/Users/rhankin/anaconda3/lib").
> >
> > Cheers,
> > Simon
> >
> >
> >
> >> On Feb 25, 2019, at 04:28, peter dalgaard <pda...@gmail.com> wrote:
> >>
> >> Hmm, how did "@rpath" get in there? I don't see it anywhere in my build
> >> and source dirs. Looks like something that should have been substituted
> >> (by perl?) with the appropriate path.
> >>
> >> Is your library (...anaconda3/lib) correctly installed? I have, for the
> >> system libcurl:
> >>
> >> pd$ ls -l /usr/lib/*curl*
> >> lrwxr-xr-x 1 root wheel 15 Nov 14 14:36 /usr/lib/libcurl.3.dylib ->
> >> libcurl.4.dylib
> >> -rwxr-xr-x 1 root wheel 854208 Nov 30 08:37 /usr/lib/libcurl.4.dylib
> >> lrwxr-xr-x 1 root wheel 15 Nov 14 14:36 /usr/lib/libcurl.dylib ->
> >> libcurl.4.dylib
> >>
> >> -pd
> >>
> >>
> >>> On 25 Feb 2019, at 01:28 , robin hankin <hankin.ro...@gmail.com> wrote:
> >>>
> >>> thanks for this Peter, my config.log file looks like this:
> >>>
> >>> configure:42615: result: yes
> >>> configure:42629: checking if libcurl is version 7 and >= 7.22.0
> >>> configure:42658: gcc -o conftest -g -O2
> >>> -I/Users/rhankin/anaconda3/include -I/usr/local/include
> >>> -I/usr/local/include -L/usr/local/lib conftest.c
> >>> -L/Users/rhankin/anaconda3/lib -lcurl -lssh2 -lssh2 -lssl -lcrypto
> >>> -lssl -lcrypto -lgssapi_krb5 -lresolv -lz -L/usr\
> >>> /local/lib -lpcre2-8 -lpcre -llzma -lbz2 -lz -licucore -ldl -lm -liconv
> >>> >&5
> >>> configure:42658: $? = 0
> >>> configure:42658: ./conftest
> >>> dyld: Library not loaded: @rpath/libcurl.4.dylib
> >>> Referenced from: /Users/rhankin/Downloads/R-devel/./conftest
> >>> Reason: image not found
> >>> ./configure: line 2254: 73408 Abort trap: 6 ./conftest$ac_exeext
> >>> configure:42658: $? = 134
> >>> configure: program exited with status 134
> >>> configure: failed program was:
> >>> | /* confdefs.h */
> >>> | #define PACKAGE_NAME "R"
> >>> | #define PACKAGE_TARNAME "R"
> >>>
> >>>
> >>>
> >>> Best wishes
> >>>
> >>>
> >>> Robin
> >>>
> >>>
> >>> hankin.ro...@gmail.com
> >>>
> >>>
> >>>
> >>> hankin.ro...@gmail.com
> >>>
> >>>
> >>>
> >>>
> >>> On Mon, Feb 25, 2019 at 11:41 AM peter dalgaard <pda...@gmail.com> wrote:
> >>>>
> >>>> It doesn't usually happen on 10.13.6... Best guess is that somehow you
> >>>> are picking up an older library (e.g. in /usr/local/lib) even if you are
> >>>> using curl-config from a newer version.
> >>>>
> >>>> The detective work needed could take off from config.log, region around
> >>>> this:
> >>>>
> >>>> configure:39937: checking if libcurl is version 7 and >= 7.22.0
> >>>> configure:39966: gcc -arch x86_64 -o conftest -g -O2
> >>>> -I/usr/local/include -L/usr/local/lib conftest.c -lcurl -lpcre -llzma
> >>>> -lbz2 -lz -licucore -lm -liconv >&5
> >>>> configure:39966: $? = 0
> >>>> configure:39966: ./conftest
> >>>> configure:39966: $? = 0
> >>>> configure:39976: result: yes
> >>>>
> >>>> That's for a succesful build, a failed one will usually give more info
> >>>> including the failing program code.
> >>>>
> >>>> -pd
> >>>>
> >>>>> On 24 Feb 2019, at 22:45 , robin hankin <hankin.ro...@gmail.com> wrote:
> >>>>>
> >>>>> Hi, macos 10.13.6, trying to compile 3.6.0, revision 76152.
> >>>>>
> >>>>> ./configure
> >>>>> [snip]
> >>>>>
> >>>>> checking for curl-config... /Users/rhankin/anaconda3/bin/curl-config
> >>>>> checking libcurl version ... 7.63.0
> >>>>> checking curl/curl.h usability... yes
> >>>>> checking curl/curl.h presence... yes
> >>>>> checking for curl/curl.h... yes
> >>>>> checking if libcurl is version 7 and >= 7.22.0... no
> >>>>> configure: error: libcurl >= 7.22.0 library and headers are required
> >>>>> with support for https
> >>>>>
> >>>>> if we have libcurl 7.63, as it says in the output, why the error? How
> >>>>> to proceed?
> >>>>>
> >>>>> hankin.ro...@gmail.com
> >>>>>
> >>>>> _______________________________________________
> >>>>> R-SIG-Mac mailing list
> >>>>> R-SIG-Mac@r-project.org
> >>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >>>>
> >>>> --
> >>>> Peter Dalgaard, Professor,
> >>>> Center for Statistics, Copenhagen Business School
> >>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> >>>> Phone: (+45)38153501
> >>>> Office: A 4.23
> >>>> Email: pd....@cbs.dk Priv: pda...@gmail.com
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>>>
> >>
> >> --
> >> Peter Dalgaard, Professor,
> >> Center for Statistics, Copenhagen Business School
> >> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
> >> Phone: (+45)38153501
> >> Office: A 4.23
> >> Email: pd....@cbs.dk Priv: pda...@gmail.com
> >>
> >> _______________________________________________
> >> R-SIG-Mac mailing list
> >> R-SIG-Mac@r-project.org
> >> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
> >
> > _______________________________________________
> > R-SIG-Mac mailing list
> > R-SIG-Mac@r-project.org
> > https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
> **********************
> "The contents of this message do not reflect any position of the U.S.
> Government or NOAA."
> **********************
> Roy Mendelssohn
> Supervisory Operations Research Analyst
> NOAA/NMFS
> Environmental Research Division
> Southwest Fisheries Science Center
> ***Note new street address***
> 110 McAllister Way
> Santa Cruz, CA 95060
> Phone: (831)-420-3666
> Fax: (831) 420-3980
> e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/
>
> "Old age and treachery will overcome youth and skill."
> "From those who have been given much, much will be expected"
> "the arc of the moral universe is long, but it bends toward justice" -MLK Jr.
>
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