Anaconda adds code to the end of your ,.profile that can really play havoc with
paths in other programs/settings - and off I remember correctly it puts the
changes at the front of your $PATH.. I moved that code in .profile to a
separate file. When I want anaconda, I just source the file. Makes problems
such as that described much less likely. If you are using iTerm2 or the like,
then you can easily have a tab with the Anaconda paths and the rest of the
tabs the more "usual" paths.
HTH,
-Roy
> On Feb 27, 2019, at 5:32 PM, Simon Urbanek <simon.urba...@r-project.org>
> wrote:
>
> That's anaconda - they don't include paths which is why it breaks everything
> until you insert a manual override via DYLD_LIBRARY_PATH. See Robin's e-mail
> he is NOT using the system curl, but rather a custom version from anaconda
> ("/Users/rhankin/anaconda3/lib").
>
> Cheers,
> Simon
>
>
>
>> On Feb 25, 2019, at 04:28, peter dalgaard <pda...@gmail.com> wrote:
>>
>> Hmm, how did "@rpath" get in there? I don't see it anywhere in my build and
>> source dirs. Looks like something that should have been substituted (by
>> perl?) with the appropriate path.
>>
>> Is your library (...anaconda3/lib) correctly installed? I have, for the
>> system libcurl:
>>
>> pd$ ls -l /usr/lib/*curl*
>> lrwxr-xr-x 1 root wheel 15 Nov 14 14:36 /usr/lib/libcurl.3.dylib ->
>> libcurl.4.dylib
>> -rwxr-xr-x 1 root wheel 854208 Nov 30 08:37 /usr/lib/libcurl.4.dylib
>> lrwxr-xr-x 1 root wheel 15 Nov 14 14:36 /usr/lib/libcurl.dylib ->
>> libcurl.4.dylib
>>
>> -pd
>>
>>
>>> On 25 Feb 2019, at 01:28 , robin hankin <hankin.ro...@gmail.com> wrote:
>>>
>>> thanks for this Peter, my config.log file looks like this:
>>>
>>> configure:42615: result: yes
>>> configure:42629: checking if libcurl is version 7 and >= 7.22.0
>>> configure:42658: gcc -o conftest -g -O2
>>> -I/Users/rhankin/anaconda3/include -I/usr/local/include
>>> -I/usr/local/include -L/usr/local/lib conftest.c
>>> -L/Users/rhankin/anaconda3/lib -lcurl -lssh2 -lssh2 -lssl -lcrypto
>>> -lssl -lcrypto -lgssapi_krb5 -lresolv -lz -L/usr\
>>> /local/lib -lpcre2-8 -lpcre -llzma -lbz2 -lz -licucore -ldl -lm -liconv >&5
>>> configure:42658: $? = 0
>>> configure:42658: ./conftest
>>> dyld: Library not loaded: @rpath/libcurl.4.dylib
>>> Referenced from: /Users/rhankin/Downloads/R-devel/./conftest
>>> Reason: image not found
>>> ./configure: line 2254: 73408 Abort trap: 6 ./conftest$ac_exeext
>>> configure:42658: $? = 134
>>> configure: program exited with status 134
>>> configure: failed program was:
>>> | /* confdefs.h */
>>> | #define PACKAGE_NAME "R"
>>> | #define PACKAGE_TARNAME "R"
>>>
>>>
>>>
>>> Best wishes
>>>
>>>
>>> Robin
>>>
>>>
>>> hankin.ro...@gmail.com
>>>
>>>
>>>
>>> hankin.ro...@gmail.com
>>>
>>>
>>>
>>>
>>> On Mon, Feb 25, 2019 at 11:41 AM peter dalgaard <pda...@gmail.com> wrote:
>>>>
>>>> It doesn't usually happen on 10.13.6... Best guess is that somehow you are
>>>> picking up an older library (e.g. in /usr/local/lib) even if you are using
>>>> curl-config from a newer version.
>>>>
>>>> The detective work needed could take off from config.log, region around
>>>> this:
>>>>
>>>> configure:39937: checking if libcurl is version 7 and >= 7.22.0
>>>> configure:39966: gcc -arch x86_64 -o conftest -g -O2
>>>> -I/usr/local/include -L/usr/local/lib conftest.c -lcurl -lpcre -llzma
>>>> -lbz2 -lz -licucore -lm -liconv >&5
>>>> configure:39966: $? = 0
>>>> configure:39966: ./conftest
>>>> configure:39966: $? = 0
>>>> configure:39976: result: yes
>>>>
>>>> That's for a succesful build, a failed one will usually give more info
>>>> including the failing program code.
>>>>
>>>> -pd
>>>>
>>>>> On 24 Feb 2019, at 22:45 , robin hankin <hankin.ro...@gmail.com> wrote:
>>>>>
>>>>> Hi, macos 10.13.6, trying to compile 3.6.0, revision 76152.
>>>>>
>>>>> ./configure
>>>>> [snip]
>>>>>
>>>>> checking for curl-config... /Users/rhankin/anaconda3/bin/curl-config
>>>>> checking libcurl version ... 7.63.0
>>>>> checking curl/curl.h usability... yes
>>>>> checking curl/curl.h presence... yes
>>>>> checking for curl/curl.h... yes
>>>>> checking if libcurl is version 7 and >= 7.22.0... no
>>>>> configure: error: libcurl >= 7.22.0 library and headers are required
>>>>> with support for https
>>>>>
>>>>> if we have libcurl 7.63, as it says in the output, why the error? How
>>>>> to proceed?
>>>>>
>>>>> hankin.ro...@gmail.com
>>>>>
>>>>> _______________________________________________
>>>>> R-SIG-Mac mailing list
>>>>> R-SIG-Mac@r-project.org
>>>>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>>>>
>>>> --
>>>> Peter Dalgaard, Professor,
>>>> Center for Statistics, Copenhagen Business School
>>>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
>>>> Phone: (+45)38153501
>>>> Office: A 4.23
>>>> Email: pd....@cbs.dk Priv: pda...@gmail.com
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>
>> --
>> Peter Dalgaard, Professor,
>> Center for Statistics, Copenhagen Business School
>> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
>> Phone: (+45)38153501
>> Office: A 4.23
>> Email: pd....@cbs.dk Priv: pda...@gmail.com
>>
>> _______________________________________________
>> R-SIG-Mac mailing list
>> R-SIG-Mac@r-project.org
>> https://stat.ethz.ch/mailman/listinfo/r-sig-mac
>
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**********************
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