For posterity: both recommendations are plain wrong so don't use (obviously, the settings didn't match the installed compilers). They are not supported in the CRAN version of R which is compiled by the clang 6.0 compiler in /usr/local/clang6 that we supply on CRAN. You can compile your own R or use homebrew, but don't expect CRAN packages to work with that. You don't even need to touch Makevars, just setting PATH to start with /usr/local/clang6/bin before compilation is sufficient.
Cheers, Simon > On Nov 26, 2018, at 1:41 AM, Adrian Dușa <dusa.adr...@gmail.com> wrote: > > On Sun, Nov 25, 2018 at 9:48 PM Jonathan Greenberg <jgreenb...@unr.edu> > wrote: >> >> Ok, figured it out but it was non-trivial. I found the solution here: >> > https://github.com/velocyto-team/velocyto.R/issues/2#issuecomment-352584213 >> >> TLDR you need to use homebrew (https://brew.sh/): >> 1) Install homebrew as linked above >> 2) Install llvm (and maybe boost): >> brew install llvm >> brew install boost >> 3) Mod your ~/.R/Makevars (nano ~/.R/Makevars) to read: >> >> CC=/usr/local/clang4/bin/clang >> CXX=/usr/local/clang4/bin/clang++ >> CXX11=/usr/local/clang4/bin/clang++ >> CXX14=/usr/local/clang4/bin/clang++ >> CXX17=/usr/local/clang4/bin/clang++ >> CXX1X=/usr/local/clang4/bin/clang++ >> LDFLAGS=-L/usr/local/clang4/lib > > > I've recently installed llvm via homebrew, after an upgrade to Mojave. > However my newly installed clang version is surely not 4 but 7, and it is > not found under /usr/local/. > Instead, I've edited the Makevars file with something like: > > CC=/usr/local/Cellar/llvm/7.0.0/bin/clang > CXX=/usr/local/Cellar/llvm/7.0.0/bin/clang++ > CXX1X=/usr/local/Cellar/llvm/7.0.0/bin/clang++ > LDFLAGS=-L/usr/local/Cellar/llvm/7.0.0/lib > -Wl,-rpath,/usr/local/Cellar/llvm/7.0.0/lib > CXXFLAGS=-I/usr/local/Cellar/llvm/7.0.0/lib/clang/7.0.0/include/ > > This seems to work for me, > Adrian > > -- > Adrian Dusa > University of Bucharest > Romanian Social Data Archive > Soseaua Panduri nr. 90-92 > 050663 Bucharest sector 5 > Romania > https://adriandusa.eu > > [[alternative HTML version deleted]] > > _______________________________________________ > R-SIG-Mac mailing list > R-SIG-Mac@r-project.org > https://stat.ethz.ch/mailman/listinfo/r-sig-mac _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
