On Sun, Nov 25, 2018 at 9:48 PM Jonathan Greenberg <jgreenb...@unr.edu> wrote: > > Ok, figured it out but it was non-trivial. I found the solution here: > https://github.com/velocyto-team/velocyto.R/issues/2#issuecomment-352584213 > > TLDR you need to use homebrew (https://brew.sh/): > 1) Install homebrew as linked above > 2) Install llvm (and maybe boost): > brew install llvm > brew install boost > 3) Mod your ~/.R/Makevars (nano ~/.R/Makevars) to read: > > CC=/usr/local/clang4/bin/clang > CXX=/usr/local/clang4/bin/clang++ > CXX11=/usr/local/clang4/bin/clang++ > CXX14=/usr/local/clang4/bin/clang++ > CXX17=/usr/local/clang4/bin/clang++ > CXX1X=/usr/local/clang4/bin/clang++ > LDFLAGS=-L/usr/local/clang4/lib
I've recently installed llvm via homebrew, after an upgrade to Mojave. However my newly installed clang version is surely not 4 but 7, and it is not found under /usr/local/. Instead, I've edited the Makevars file with something like: CC=/usr/local/Cellar/llvm/7.0.0/bin/clang CXX=/usr/local/Cellar/llvm/7.0.0/bin/clang++ CXX1X=/usr/local/Cellar/llvm/7.0.0/bin/clang++ LDFLAGS=-L/usr/local/Cellar/llvm/7.0.0/lib -Wl,-rpath,/usr/local/Cellar/llvm/7.0.0/lib CXXFLAGS=-I/usr/local/Cellar/llvm/7.0.0/lib/clang/7.0.0/include/ This seems to work for me, Adrian -- Adrian Dusa University of Bucharest Romanian Social Data Archive Soseaua Panduri nr. 90-92 050663 Bucharest sector 5 Romania https://adriandusa.eu [[alternative HTML version deleted]] _______________________________________________ R-SIG-Mac mailing list R-SIG-Mac@r-project.org https://stat.ethz.ch/mailman/listinfo/r-sig-mac
