For what it's worth, the same bug is present on linux when compiling R
with a custom BLAS (either ATLAS or OpenBLAS). The directory needs to
be made by hand first. I beleive I have reported this some time ago
but no action was taken. Compiling R with R internal BLAS does not
results in the error.
Peter
On Fri, Sep 28, 2018 at 10:52 AM Kasper Daniel Hansen
<kasperdanielhan...@gmail.com> wrote:
>
> I am trying to compile and install R under High Sierra with Accelerate BLAS
> but with R lapack.
>
> My relevant configure call is --with-blas="-framework Accelerate" but
> omitting --with-lapack. Full call is pasted at the end of this email
>
> I can do
> make
> make check
> but make install fails with
>
> make[2]: Nothing to be done for `install'.
> /usr/local/clang6/bin/clang -I. -I../../src/include
> -I../../../R-3.5.x-src/src/include -I/opt/X11/include -I/usr/local/include
> -DHAVE_CONFIG_H -Wall -mtune=native -g -O2 -L/usr/local/clang6/lib
> -L/usr/local/lib -L/usr/local/opt/tcl-tk/lib
> -DR_HOME='"/usr/local/R/R-3.5.x/lib/R"' \
> -o Rscript ../../../R-3.5.x-src/src/unix/Rscript.c
> mkdir /usr/local/R/R-3.5.x/lib/R/bin/exec
> mkdir /usr/local/R/R-3.5.x/lib/R/modules
> cp: /usr/local/R/R-3.5.x/lib/R/lib/libRlapack.dylib: No such file or
> directory
> make[3]: *** [install] Error 1
> make[2]: *** [install] Error 1
> make[1]: *** [install] Error 1
> make: *** [install] Error 1
>
> I manually verified that libRlapack.dylib had been build in the building
> directory's "lib". I then just did
>
> sudo mkdir /usr/local/R/R-3.5.x/lib/R/lib
>
> (my installation directory is /usr/local/R/R-3.5.x) and redid make install
> which now worked. I get
>
> $ ls /usr/local/R/R-3.5.x/lib/R/lib
> libRlapack.dylib
>
> My _guess_ is that since I am using R's lapack and system BLAS that the
> RHOME/lib directory does not get created.
>
> Btw., this might be a bad idea (happy to hear about this) but the
> installation should work since I can do make check
>
> Kasper
>
> configure
>
> ../${SRCDIR}/configure SHELL='/bin/bash' \
> --prefix=/usr/local/R/R-${R_VERSION} --disable-R-framework\
> CC="/usr/local/clang6/bin/clang" \
> CXX="/usr/local/clang6/bin/clang++" \
> F77="/usr/local/gfortran/bin/gfortran" \
> FC="$F77" \
> OBJC="clang" \
> CFLAGS="-Wall -mtune=native -g -O2" \
> CXXFLAGS="-Wall -mtune=natuve -g -O2" \
> OBJCFLAGS="-Wall -mtune=native -g -O2 -fobjc-exceptions" \
> F77FLAGS="-Wall -g -O2 -mtune=generic" \
> FCFLAGS="$F77FLAGS" \
> FLIBS="-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0
> -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm" \
> LDFLAGS="-L/usr/local/clang6/lib -L/usr/local/lib" \
> DYLD_FALLBACK_LIBRARY_PATH="/usr/local/clang6/lib:/usr/local/lib" \
>
> PKG_CONFIG_PATH="/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/lib/pkgconfig"
> \
> JAVA_HOME="/System/Library/Frameworks/JavaVM.framework/Home" \
> JAVA_CPPFLAGS="-I/System/Library/Frameworks/JavaVM.framework/Headers" \
> JAVA_LD_LIBRARY_PATH="" \
> JAVA_LIBS="-framework JavaVM" \
> --enable-memory-profiling\
> --x-includes=/opt/X11/include --x-libraries=/opt/X11/lib\
> -with-tcltk=/usr/local/opt/tcl-tk/lib\
> --with-blas="-framework Accelerate" | tee ../configure-${R_VERSION}
>
> [[alternative HTML version deleted]]
>
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