I am trying to compile and install R under High Sierra with Accelerate BLAS
but with R lapack.
My relevant configure call is --with-blas="-framework Accelerate" but
omitting --with-lapack. Full call is pasted at the end of this email
I can do
make
make check
but make install fails with
make[2]: Nothing to be done for `install'.
/usr/local/clang6/bin/clang -I. -I../../src/include
-I../../../R-3.5.x-src/src/include -I/opt/X11/include -I/usr/local/include
-DHAVE_CONFIG_H -Wall -mtune=native -g -O2 -L/usr/local/clang6/lib
-L/usr/local/lib -L/usr/local/opt/tcl-tk/lib
-DR_HOME='"/usr/local/R/R-3.5.x/lib/R"' \
-o Rscript ../../../R-3.5.x-src/src/unix/Rscript.c
mkdir /usr/local/R/R-3.5.x/lib/R/bin/exec
mkdir /usr/local/R/R-3.5.x/lib/R/modules
cp: /usr/local/R/R-3.5.x/lib/R/lib/libRlapack.dylib: No such file or
directory
make[3]: *** [install] Error 1
make[2]: *** [install] Error 1
make[1]: *** [install] Error 1
make: *** [install] Error 1
I manually verified that libRlapack.dylib had been build in the building
directory's "lib". I then just did
sudo mkdir /usr/local/R/R-3.5.x/lib/R/lib
(my installation directory is /usr/local/R/R-3.5.x) and redid make install
which now worked. I get
$ ls /usr/local/R/R-3.5.x/lib/R/lib
libRlapack.dylib
My _guess_ is that since I am using R's lapack and system BLAS that the
RHOME/lib directory does not get created.
Btw., this might be a bad idea (happy to hear about this) but the
installation should work since I can do make check
Kasper
configure
../${SRCDIR}/configure SHELL='/bin/bash' \
--prefix=/usr/local/R/R-${R_VERSION} --disable-R-framework\
CC="/usr/local/clang6/bin/clang" \
CXX="/usr/local/clang6/bin/clang++" \
F77="/usr/local/gfortran/bin/gfortran" \
FC="$F77" \
OBJC="clang" \
CFLAGS="-Wall -mtune=native -g -O2" \
CXXFLAGS="-Wall -mtune=natuve -g -O2" \
OBJCFLAGS="-Wall -mtune=native -g -O2 -fobjc-exceptions" \
F77FLAGS="-Wall -g -O2 -mtune=generic" \
FCFLAGS="$F77FLAGS" \
FLIBS="-L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0
-L/usr/local/gfortran/lib -lgfortran -lquadmath -lm" \
LDFLAGS="-L/usr/local/clang6/lib -L/usr/local/lib" \
DYLD_FALLBACK_LIBRARY_PATH="/usr/local/clang6/lib:/usr/local/lib" \
PKG_CONFIG_PATH="/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr/lib/pkgconfig"
\
JAVA_HOME="/System/Library/Frameworks/JavaVM.framework/Home" \
JAVA_CPPFLAGS="-I/System/Library/Frameworks/JavaVM.framework/Headers" \
JAVA_LD_LIBRARY_PATH="" \
JAVA_LIBS="-framework JavaVM" \
--enable-memory-profiling\
--x-includes=/opt/X11/include --x-libraries=/opt/X11/lib\
-with-tcltk=/usr/local/opt/tcl-tk/lib\
--with-blas="-framework Accelerate" | tee ../configure-${R_VERSION}
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