Maybe this would provide a little more explicit information about what is going
wrong:
/usr/local/clang6/bin/clang
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I/usr/local/clang6/include -fPIC -Wall -g -O2 -c init.c -o init.o
In file included from init.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:34:11: fatal
error: 'string.h' file not
found
# include <string.h> /* for memcpy, memset */
^~~~~~~~~~
1 error generated.
make: *** [init.o] Error 1
> On May 26, 2018, at 5:35 PM, Koenker, Roger W <rkoen...@illinois.edu> wrote:
>
> Humm… without the F77 and FLIBS lines I get lots of complaints about:
>
> … error: unsupported directive '.stabs’
>
> that some from using the old version of gfortran that still exists in
> /usr/local/bin
> With them the gfortran runs nicely, but the first occurrence of a C routine
> produces
> the error detailed below. Obviously, there is something fishy with my setup,
> but
> I thought that fresh R and the two tools packages should have all fitted
> together.
> Thanks again for your suggestions.
>
>
>> On May 26, 2018, at 4:20 PM, Berend Hasselman <b...@xs4all.nl> wrote:
>>
>>>
>>> On 26 May 2018, at 15:17, Roger Koenker <rkoen...@illinois.edu> wrote:
>>>
>>> Thanks Berend that helps considerably, I added something for gfortran as
>>> follows:
>>>
>>> CC=/usr/local/clang6/bin/clang
>>> CXX=/usr/local/clang6/bin/clang++
>>> LDFLAGS =-L/usr/local/clang6/lib
>>> F77=/usr/local/gfortran/bin/gfortran
>>> FLIBS=-L/usr/local/gfortran/lib -lgfortran
>>>
>>> and now the gfortran seems to be happy, but I’m still seeing problems with
>>> some C:
>>>
>>> /usr/local/clang6/bin/clang
>>> -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
>>> -I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o
>>> In file included from init.c:1:
>>> /Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:34:11: fatal
>>> error: 'string.h' file not
>>> found
>>> # include <string.h> /* for memcpy, memset */
>>> ^~~~~~~~~~
>>> 1 error generated.
>>> make: *** [init.o] Error 1
>>> ERROR: compilation failed for package ‘quantreg’
>>>
>>> presumably I’m still missing some LDFLGS for clang6?
>>>
>>
>> LDFLAGS I presume?
>> I don't quite understand what is going wrong exactly.
>>
>> Have you installed MacOs commandlinetools? I do have them installed.
>> See the first few lines of section C.3 in the R Administration and
>> Installation manual.
>> And see item 2 and item 4 in the README.html in the
>> gfortran-6.1-ElCapitan.dmg.
>>
>> But you are defining too many lines in your Makevars.
>> I do not have F77 and FLIBS in mine. All taken care of by R's Makeconf (see
>> /Library/Frameworks/R.framework/Versions/3.5/Resources/etc/Makeconf)
>> There is a symlink in /usr/local/bin/gfortran to the actual gfortran (the
>> gfortran installer takes care of that).
>>
>> I have run R CMD check on quantreg_5.35 and all is ok. No errors.
>>
>> Berend
>
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