Thanks Berend that helps considerably, I added something for gfortran as
follows:
CC=/usr/local/clang6/bin/clang
CXX=/usr/local/clang6/bin/clang++
LDFLAGS =-L/usr/local/clang6/lib
F77=/usr/local/gfortran/bin/gfortran
FLIBS=-L/usr/local/gfortran/lib -lgfortran
and now the gfortran seems to be happy, but I’m still seeing problems with some
C:
/usr/local/clang6/bin/clang
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I/usr/local/include -fPIC -Wall -g -O2 -c init.c -o init.o
In file included from init.c:1:
/Library/Frameworks/R.framework/Resources/include/R_ext/RS.h:34:11: fatal
error: 'string.h' file not
found
# include <string.h> /* for memcpy, memset */
^~~~~~~~~~
1 error generated.
make: *** [init.o] Error 1
ERROR: compilation failed for package ‘quantreg’
presumably I’m still missing some LDFLGS for clang6?
> On May 26, 2018, at 1:26 PM, Berend Hasselman <b...@xs4all.nl> wrote:
>
>
>> On 26 May 2018, at 14:19, Berend Hasselman <b...@xs4all.nl> wrote:
>>
>>
>>> On 26 May 2018, at 13:36, Roger Koenker <rkoen...@illinois.edu> wrote:
>>>
>>> I’ve just installed R3.5 and clang6 and fortran 6.1 and now realize that
>>> the compiler packages install in
>>> /usr/local/clang6 and /usr/local/gfortran respectively. I expected that
>>> there would also be some automatic
>>> symbolic links to /usr/local/bin etc. however when I tried to compile
>>> packages from source the old versions
>>> of the compilers are invoked. I realize that this is probably quite
>>> elementary, but I would appreciate some
>>> advice on how to complete the installation so the new compilers are
>>> accessed.
>>>
>>
>> I added these two lines to my ~/.profile
>>
>> # clang6 for R 3.5.0
>> export PATH=/usr/local/clang6/bin:$PATH
>>
>> and that seems to do the job.
>>
>
> Might not do the job.
>
> But I also added this to my ~/.R/Makevars
>
> # for R 3.5.0
> # https://cran.r-project.org/bin/macosx/tools/
>
> CC=/usr/local/clang6/bin/clang
> CXX=/usr/local/clang6/bin/clang++
> LDFLAGS =-L/usr/local/clang6/lib
>
> and that really does it.
>
> Berend
>
>> Berend
>>
>>> Many thanks,
>>> Roger
>>>
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