On 14.09.2023 23:35, Leonard Mada wrote:
Dear Uwe,
I found out what is going on. There is an example:
## Write the pdb object in file "Rpdb.pdb" into the current directory
write.pdb(pdb, file = "Rpdb.pdb")
In examples, you should write to tempdir(), if at all.
Best,
Uwe Ligges
The example was present in the previous version as well. So I did not
thought about it. I do not know how to handle this: although the example
should probably remain.
Sincerely,
Leonard
On 9/15/2023 12:27 AM, Uwe Ligges wrote:
The spellng is fine and not a problem.
For
* checking for non-standard things in the check directory ... NOTE
Found the following files/directories:
‘Rpdb.pdb’
You need to move this to ./inst or a subdirectory or, if data,
consider ./extdata See Writing R Extensions.
Best,
Uwe Ligges
On 14.09.2023 22:06, Avraham Adler wrote:
Regarding PDB, in Rd format it’s best to wrap that in an \acronym{}
tag. See section 2.3 of
https://cran.r-project.org/doc/manuals/R-exts.html#Marking-text
Avi
Sent from my iPhone
On Sep 14, 2023, at 3:40 PM, Leonard Mada via R-package-devel
<r-package-devel@r-project.org> wrote:
Dear List Members,
After resubmitting the updated version of the Rpdb package (2.3.1),
the following Notes were generated:
1.) Spelling PDB
https://win-builder.r-project.org/incoming_pretest/Rpdb_2.3.1_20230914_173458/Windows/00check.log
https://win-builder.r-project.org/incoming_pretest/Rpdb_2.3.1_20230914_173458/Debian/00check.log
The PDB stands for Protein Data Bank:
http://www.wwpdb.org/documentation/file-format-content/format33/v3.3.html
It should be the correct spelling (and was the same in the previous
versions of the package).
2.) Small Sample PDB Files
* checking for non-standard things in the check directory ...
NOTE Found the following files/directories: ‘Rpdb.pdb’
There is a directory with 3 very small sample pdb-files. The
directory was also present in the previous version.
How should I proceed? Or did I miss something?
Sincerely,
Leonard
______________________________________________
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
[[alternative HTML version deleted]]
______________________________________________
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
______________________________________________
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
