Regarding PDB, in Rd format it’s best to wrap that in an \acronym{} tag. See
section 2.3 of https://cran.r-project.org/doc/manuals/R-exts.html#Marking-text
Avi
Sent from my iPhone
> On Sep 14, 2023, at 3:40 PM, Leonard Mada via R-package-devel
> <r-package-devel@r-project.org> wrote:
>
> Dear List Members,
>
> After resubmitting the updated version of the Rpdb package (2.3.1), the
> following Notes were generated:
>
> 1.) Spelling PDB
> https://win-builder.r-project.org/incoming_pretest/Rpdb_2.3.1_20230914_173458/Windows/00check.log
> https://win-builder.r-project.org/incoming_pretest/Rpdb_2.3.1_20230914_173458/Debian/00check.log
>
> The PDB stands for Protein Data Bank:
> http://www.wwpdb.org/documentation/file-format-content/format33/v3.3.html
>
> It should be the correct spelling (and was the same in the previous versions
> of the package).
>
> 2.) Small Sample PDB Files
> * checking for non-standard things in the check directory ...
> NOTE Found the following files/directories: ‘Rpdb.pdb’
>
> There is a directory with 3 very small sample pdb-files. The directory was
> also present in the previous version.
>
> How should I proceed? Or did I miss something?
>
>
> Sincerely,
>
>
> Leonard
>
> ______________________________________________
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
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