Eric.
On Fri, Dec 10, 2021 at 10:25 AM Duncan Murdoch
<murdoch.dun...@gmail.com <mailto:murdoch.dun...@gmail.com>> wrote:
Just delete the .html output from earlier runs before you run R CMD
build, and it will have no choice but to rebuild them.
Duncan Murdoch
On 10/12/2021 9:29 a.m., Eric Weine wrote:
> Hello,
>
> Sorry yes, I think that my initial post on stack overflow is a bit
> misleading. I have checked the file that is built when I run "R CMD
> build ...", and it looks like what is on CRAN. The question is
why is
> that different from when I run "devtools::build_vignette" or when
I just
> knit the vignette in RStudio. I know that "R CMD build" creates the
> vignette each time from scratch. Should I update my R version or
> something? I'm just trying to isolate the difference between R
CMD build
> and the other tools I have to knit vignette so I can ensure they are
> consistent.
>
> Thanks for the help,
>
> Eric.
>
> Date: Thu, 9 Dec 2021 16:52:09 -0500
> From: Eric Weine <ericwein...@gmail.com
<mailto:ericwein...@gmail.com> <mailto:ericwein...@gmail.com
<mailto:ericwein...@gmail.com>>>
> To: r-package-devel@r-project.org
<mailto:r-package-devel@r-project.org>
<mailto:r-package-devel@r-project.org
<mailto:r-package-devel@r-project.org>>
> Subject: [R-pkg-devel] R Vignette Knitting Issues in CRAN Release
> Message-ID:
>
>
<CAO=DOOayQEiiunh=0hrzayidhjjgalq2ekrfnatsbbl0+yu...@mail.gmail.com <mailto:0hrzayidhjjgalq2ekrfnatsbbl0%2byu...@mail.gmail.com>
> <mailto:0hrzayidhjjgalq2ekrfnatsbbl0%2byu...@mail.gmail.com
<mailto:0hrzayidhjjgalq2ekrfnatsbbl0%252byu...@mail.gmail.com>>>
> Content-Type: text/plain; charset="utf-8"
>
> Hello,
>
> I'm having an issue where my vignette created using R CMD
build does not
> match the vignette created using devtools::build_vignettes or
when I
> knit
> with RStudio. I posted about this issue on stack overflow here
>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 <https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>
>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 <https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>>>.
> Originally I thought that this might be related to an
omission in the
> DESCRIPTION file, but this no longer seems to be the case.
Here is a
> repost
> of my initial stack overflow post:
>
> I recently released a vignette with version 1.1 of my R
package. The Rmd
> for the vignette can be found here
>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd <https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>
>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd <https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>>>.
> When I create the vignette locally, I see author information
and the
> table
> of contents at the top of the vignette, as expected. However,
when I
> submitted this package to CRAN and the vignette was created there
>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html <https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>
>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html <https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>>>,
> I no longer see the table of contents or author information.
Does anyone
> know why this may be happening?
>
> Thanks,
>
> Eric.
>
> [[alternative HTML version deleted]]
>
>
>
>
> ------------------------------
>
> Date: Fri, 10 Dec 2021 11:41:31 +1300
> From: Simon Urbanek <simon.urba...@r-project.org>
> To: Eric Weine <ericwein...@gmail.com
<mailto:ericwein...@gmail.com> <mailto:ericwein...@gmail.com
<mailto:ericwein...@gmail.com>>>
> Cc: r-package-devel@r-project.org
<mailto:r-package-devel@r-project.org>
<mailto:r-package-devel@r-project.org
<mailto:r-package-devel@r-project.org>>
> Subject: Re: [R-pkg-devel] R Vignette Knitting Issues in CRAN
Release
> Message-ID: <52ec72dc-b583-4d1b-97c3-979ec96ff...@r-project.org>
> Content-Type: text/plain; charset="us-ascii"
>
> Eric,
>
> did you check the contents of the package file you submitted? The
> session info in the vignette is quite old, and the build has been
> packaged by you so I don't think it has anything to do with CRAN,
> but to make sure, check the file you submitted.
>
> Cheers,
> Simon
>
>
> > On Dec 10, 2021, at 10:52 AM, Eric Weine
<ericwein...@gmail.com <mailto:ericwein...@gmail.com>
> <mailto:ericwein...@gmail.com
<mailto:ericwein...@gmail.com>>> wrote:
> >
> > Hello,
> >
> > I'm having an issue where my vignette created using R CMD
build
> does not
> > match the vignette created using devtools::build_vignettes or
> when I knit
> > with RStudio. I posted about this issue on stack overflow here
> >
>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 <https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>
>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 <https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>>>.
> > Originally I thought that this might be related to an
omission in the
> > DESCRIPTION file, but this no longer seems to be the case.
Here
> is a repost
> > of my initial stack overflow post:
> >
> > I recently released a vignette with version 1.1 of my R
package.
> The Rmd
> > for the vignette can be found here
> >
>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd <https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>
>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd <https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>>>.
> > When I create the vignette locally, I see author
information and
> the table
> > of contents at the top of the vignette, as expected.
However, when I
> > submitted this package to CRAN and the vignette was
created there
> >
>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html <https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>
>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html <https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>>>,
> > I no longer see the table of contents or author
information. Does
> anyone
> > know why this may be happening?
> >
> > Thanks,
> >
> > Eric.
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org>
> <mailto:R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org>> mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
> <https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>>
> >
>
>
>
>
> ------------------------------
>
> Date: Fri, 10 Dec 2021 05:38:15 -0500
> From: Duncan Murdoch <murdoch.dun...@gmail.com
<mailto:murdoch.dun...@gmail.com>
> <mailto:murdoch.dun...@gmail.com
<mailto:murdoch.dun...@gmail.com>>>
> To: Eric Weine <ericwein...@gmail.com
<mailto:ericwein...@gmail.com> <mailto:ericwein...@gmail.com
<mailto:ericwein...@gmail.com>>>
> Cc: r-package-devel@r-project.org
<mailto:r-package-devel@r-project.org>
<mailto:r-package-devel@r-project.org
<mailto:r-package-devel@r-project.org>>
> Subject: Re: [R-pkg-devel] R Vignette Knitting Issues in CRAN
Release
> Message-ID: <02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com
<mailto:02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com>
> <mailto:02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com
<mailto:02621081-6881-de33-2d8f-a5bcdcc3c...@gmail.com>>>
> Content-Type: text/plain; charset="utf-8"; Format="flowed"
>
> On 09/12/2021 5:41 p.m., Simon Urbanek wrote:
> > Eric,
> >
> > did you check the contents of the package file you
submitted? The
> session info in the vignette is quite old, and the build has been
> packaged by you so I don't think it has anything to do with CRAN,
> but to make sure, check the file you submitted.
>
> Yes, I think the tarball contained an old version of the
.html file.
> The timestamp on it is the same as on many other items in the
tarball,
> and that likely means it was put into inst/doc by the build
process.
>
> Eric, on Github I notice you have a committed copy of the
HTML file in
> the vignettes directory. This could be the cause of your
problem.
> Normally you should only have the vignette source in the
vignettes
> directory. I wouldn't be surprised if git the build process
thinks the
> .html file is newer than the .Rmd and doesn't rebuild it,
putting a
> stale copy into the tarball.
>
> Duncan Murdoch
>
> >
> > Cheers,
> > Simon
> >
> >
> >> On Dec 10, 2021, at 10:52 AM, Eric Weine
<ericwein...@gmail.com <mailto:ericwein...@gmail.com>
> <mailto:ericwein...@gmail.com
<mailto:ericwein...@gmail.com>>> wrote:
> >>
> >> Hello,
> >>
> >> I'm having an issue where my vignette created using R CMD
build
> does not
> >> match the vignette created using devtools::build_vignettes or
> when I knit
> >> with RStudio. I posted about this issue on stack overflow
here
> >>
>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 <https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>
>
<https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623 <https://stackoverflow.com/questions/70204611/vignette-table-of-contents-missing-when-package-published-to-cran/70205623?noredirect=1#comment124116982_70205623>>>.
> >> Originally I thought that this might be related to an
omission
> in the
> >> DESCRIPTION file, but this no longer seems to be the
case. Here
> is a repost
> >> of my initial stack overflow post:
> >>
> >> I recently released a vignette with version 1.1 of my R
package.
> The Rmd
> >> for the vignette can be found here
> >>
>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd <https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>
>
<https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd <https://github.com/eweine/qqconf/blob/master/qqconf/vignettes/qqconf_introduction.Rmd>>>.
> >> When I create the vignette locally, I see author
information and
> the table
> >> of contents at the top of the vignette, as expected.
However, when I
> >> submitted this package to CRAN and the vignette was
created there
> >>
>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html <https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>
>
<https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html <https://cloud.r-project.org/web/packages/qqconf/vignettes/qqconf_introduction.html>>>,
> >> I no longer see the table of contents or author information.
> Does anyone
> >> know why this may be happening?
> >>
> >> Thanks,
> >>
> >> Eric.
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> ______________________________________________
> >> R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org>
> <mailto:R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org>> mailing list
> >> https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
> <https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>>
> >>
> >
> > ______________________________________________
> > R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org>
> <mailto:R-package-devel@r-project.org
<mailto:R-package-devel@r-project.org>> mailing list
> > https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
> <https://stat.ethz.ch/mailman/listinfo/r-package-devel
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>>
>
>
>
> **********************************************
>
