Thank you so much Sebastian! Pooja Pooja Gangras, Ph.D. Postdoctoral Research Scientist - RNA Therapeutics Eli Lilly and Company Lilly Corporate Center, Indianapolis IN 46285 U.S.A. Office phone number: (317) 651-0589 Cellphone number: (614) 906-0940 gangras_po...@lilly.com | www.lilly.com
CONFIDENTIALITY NOTICE: This email message (including all attachments) is for the sole use of the intended recipient(s) and may contain confidential information. Any unauthorized review, use, disclosure, copying or distribution is strictly prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message. -----Original Message----- From: Sebastian Meyer <seb.me...@fau.de> Sent: Monday, August 16, 2021 2:49 PM To: Pooja Gangras <gangras_po...@lilly.com>; r-package-devel@r-project.org Subject: [EXTERNAL] Re: [R-pkg-devel] FW: [CRAN-pretest-archived] CRAN submission surfaltr 1.0.0.9000 EXTERNAL EMAIL: Use caution before replying, clicking links, and opening attachments. Packages on CRAN can depend on released packages from both CRAN and Bioconductor. I don't know why "msa" is missing on the Debian check machine. The check results of another CRAN package that suggests "msa" indicate that this package is currently unavailable on all Linux, Solaris and macOS machines of the CRAN check farm: https://cran.r-project.org/web/checks/check_results_bio3d.html Maybe this is a temporary problem? You could try resubmitting in a few days. I think you should remove the automatic package installation from your functions; they should not write to the user's home filespace without consent. You should probably also avoid this NOTE when submitting to CRAN: > Version contains large components (1.0.0.9000) Best regards, Sebastian Meyer Am 16.08.21 um 17:37 schrieb Pooja Gangras via R-package-devel: > Hi all, > > PFA the pre-check results for my package surfaltr from CRAN. I am having > troubles with a package dependency on Debian that I am not able to fix. 2 > functions in my package require a Bioconductor package msa > (https://bioconductor.org/packages/release/bioc/html/msa.html). To deal with > this error, I tried the following solution of adding a call to BiocManager > and also including a code for msa installation but it did not help: > > #' @importFrom BiocManager install > #' @import msa > . > . > . > Foo() { > if (!requireNamespace("msa", quietly = TRUE)){ > BiocManager::install("msa")} > } > > How do I solve the problem so that I don't generate this error with Debian? > > Thank you, > Pooja > > > Pooja Gangras, Ph.D. > Postdoctoral Research Scientist - RNA Therapeutics Eli Lilly and > Company Lilly Corporate Center, Indianapolis IN 46285 U.S.A. > Office phone number: (317) 651-0589 > Cellphone number: (614) 906-0940 > gangras_po...@lilly.com | www.lilly.com > > > CONFIDENTIALITY NOTICE: This email message (including all attachments) is for > the sole use of the intended recipient(s) and may contain confidential > information. Any unauthorized review, use, disclosure, copying or > distribution is strictly prohibited. If you are not the intended recipient, > please contact the sender by reply email and destroy all copies of the > original message. > > -----Original Message----- > From: lig...@statistik.tu-dortmund.de > <lig...@statistik.tu-dortmund.de> > Sent: Monday, August 16, 2021 10:32 AM > To: Pooja Gangras <gangras_po...@lilly.com> > Cc: cran-submissi...@r-project.org > Subject: [EXTERNAL] [CRAN-pretest-archived] CRAN submission surfaltr > 1.0.0.9000 > > EXTERNAL EMAIL: Use caution before replying, clicking links, and opening > attachments. > > Dear maintainer, > > package surfaltr_1.0.0.9000.tar.gz does not pass the incoming checks > automatically, please see the following pre-tests: > Windows: > <https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.900 > 0_20210816_162209/Windows/00check.log> > Status: 1 NOTE > Debian: > <https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.900 > 0_20210816_162209/Debian/00check.log> > Status: 1 ERROR, 1 NOTE > > > > Please fix all problems and resubmit a fixed version via the webform. > If you are not sure how to fix the problems shown, please ask for help on the > R-package-devel mailing list: > <https://stat.ethz.ch/mailman/listinfo/r-package-devel> > If you are fairly certain the rejection is a false positive, please reply-all > to this message and explain. > > More details are given in the directory: > <https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.900 > 0_20210816_162209/> The files will be removed after roughly 7 days. > > No strong reverse dependencies to be checked. > > Best regards, > CRAN teams' auto-check service > > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
