Hi all,
PFA the pre-check results for my package surfaltr from CRAN. I am having
troubles with a package dependency on Debian that I am not able to fix. 2
functions in my package require a Bioconductor package msa
(https://bioconductor.org/packages/release/bioc/html/msa.html). To deal with
this error, I tried the following solution of adding a call to BiocManager and
also including a code for msa installation but it did not help:
#' @importFrom BiocManager install
#' @import msa
.
.
.
Foo() {
if (!requireNamespace("msa", quietly = TRUE)){
BiocManager::install("msa")}
}
How do I solve the problem so that I don't generate this error with Debian?
Thank you,
Pooja
Pooja Gangras, Ph.D.
Postdoctoral Research Scientist - RNA Therapeutics
Eli Lilly and Company
Lilly Corporate Center, Indianapolis IN 46285 U.S.A.
Office phone number: (317) 651-0589
Cellphone number: (614) 906-0940
gangras_po...@lilly.com | www.lilly.com
CONFIDENTIALITY NOTICE: This email message (including all attachments) is for
the sole use of the intended recipient(s) and may contain confidential
information. Any unauthorized review, use, disclosure, copying or distribution
is strictly prohibited. If you are not the intended recipient, please contact
the sender by reply email and destroy all copies of the original message.
-----Original Message-----
From: lig...@statistik.tu-dortmund.de <lig...@statistik.tu-dortmund.de>
Sent: Monday, August 16, 2021 10:32 AM
To: Pooja Gangras <gangras_po...@lilly.com>
Cc: cran-submissi...@r-project.org
Subject: [EXTERNAL] [CRAN-pretest-archived] CRAN submission surfaltr 1.0.0.9000
EXTERNAL EMAIL: Use caution before replying, clicking links, and opening
attachments.
Dear maintainer,
package surfaltr_1.0.0.9000.tar.gz does not pass the incoming checks
automatically, please see the following pre-tests:
Windows:
<https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.9000_20210816_162209/Windows/00check.log>
Status: 1 NOTE
Debian:
<https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.9000_20210816_162209/Debian/00check.log>
Status: 1 ERROR, 1 NOTE
Please fix all problems and resubmit a fixed version via the webform.
If you are not sure how to fix the problems shown, please ask for help on the
R-package-devel mailing list:
<https://stat.ethz.ch/mailman/listinfo/r-package-devel>
If you are fairly certain the rejection is a false positive, please reply-all
to this message and explain.
More details are given in the directory:
<https://win-builder.r-project.org/incoming_pretest/surfaltr_1.0.0.9000_20210816_162209/>
The files will be removed after roughly 7 days.
No strong reverse dependencies to be checked.
Best regards,
CRAN teams' auto-check service
Flavor: r-devel-windows-ix86+x86_64
Check: CRAN incoming feasibility, Result: NOTE
Maintainer: 'Pooja Gangras <gangras_po...@lilly.com>'
New submission
Version contains large components (1.0.0.9000)
Possibly misspelled words in DESCRIPTION:
APPRIS (25:78)
Isoform (3:44)
Phobius (22:29, 26:81)
SurfaltR (24:68)
TMHMM (22:19, 26:72)
Topologies (3:61)
bioinformatic (22:71)
customizable (27:19)
druggable (17:65)
isoform (28:42)
isoforms (19:41, 23:48, 25:12)
oligonucleotide (18:51)
proteome (17:75)
subcellular (19:85)
surfaltR (4:17, 27:59)
surfaltrbib (29:143)
topologies (24:3, 26:55)
transmembrane (20:29)
Flavor: r-devel-linux-x86_64-debian-gcc
Check: CRAN incoming feasibility, Result: NOTE
Maintainer: 'Pooja Gangras <gangras_po...@lilly.com>'
New submission
Version contains large components (1.0.0.9000)
Possibly misspelled words in DESCRIPTION:
APPRIS (25:78)
Isoform (3:44)
Phobius (22:29, 26:81)
SurfaltR (24:68)
TMHMM (22:19, 26:72)
Topologies (3:61)
bioinformatic (22:71)
customizable (27:19)
druggable (17:65)
isoform (28:42)
isoforms (19:41, 23:48, 25:12)
proteome (17:75)
subcellular (19:85)
surfaltR (4:17, 27:59)
surfaltrbib (29:143)
topologies (24:3, 26:55)
transmembrane (20:29)
Flavor: r-devel-linux-x86_64-debian-gcc
Check: package dependencies, Result: ERROR
Package required but not available: 'msa'
See section 'The DESCRIPTION file' in the 'Writing R Extensions'
manual.
______________________________________________
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
