I should maybe add that I'm not even sure why I need Bioconductor, the
package has:
Imports: MASS, cluster, mclust, flexmix, prabclus, class, diptest,
robustbase, kernlab, grDevices, graphics, methods, stats, utils, parallel
Suggests: tclust, pdfCluster, EMMIXskew, mvtnorm
Christian
On 1/7/20 2:54 PM, Christian Martin Hennig wrote:
> Hi there,
>
> I'm trying to track down some errors and issues of my fpc package. As I can't
> reproduce any of these on my machine, I'm using rhub and docker.
>
> I'm getting Bioconductor related issues with both
>
> local_check_linux("fpc_2.2-3.tar.gz", image = "rhub/debian-clang-devel")
>
> and
>
> rhub::check("fpc_2.2-3.tar.gz", platform = "debian-clang-devel")
>
> namely locally:
>
> source('https://bioconductor.org/biocLite.R')
> Error: With R version 3.5 or greater, install Bioconductor packages using
> BiocManager; see https://bioconductor.org/install
> Execution halted
> Error in run(bash, c(file.path(wd, "rhub-linux.sh"), args), echo = TRUE, :
> System command error
>
> ...and on rhub:
>
> 91<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L91>#>
> Error: package or namespace load failed for 'BiocManager':
>
> 92<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L92>#>
> .onAttach failed in attachNamespace() for 'BiocManager', details:
>
> 93<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L93>#>
> call: if (version[, 1:2] != version) return(sprintf("version '%s' must have
> two components, e.g., '3.7'",
>
> 94<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L94>#>
> error: argument is of length zero
>
> 95<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L95>#>
> Error: loading failed
>
> 96<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L96>#>
> Execution halted
>
> 97<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L97>#>
> ERROR: loading failed
>
> (To be totally honest, I'm not even sure whether the latter rhub issue
> doesn't refer to the local docker thing as well, because this was linked from
> an R-hub builder PREPERROR email, it also mentions docker, and all the time
> indications don't make it unambiguously clear to what build they refer.)
>
> Not sure what to do about this. Are there any other options apart from
> rhub/docker to get wiser about my errors and issues (error on debian-clang in
> a routine that shows nothing suspicious on my machine, additional issues
> ATLAS<https://www.stats.ox.ac.uk/pub/bdr/Rblas/ATLAS/fpc.out>
> MKL<https://www.stats.ox.ac.uk/pub/bdr/Rblas/MKL/fpc.out>
> noLD<https://www.stats.ox.ac.uk/pub/bdr/noLD/fpc.out>
> OpenBLAS)?<https://www.stats.ox.ac.uk/pub/bdr/Rblas/OpenBLAS/fpc.out>
>
> Yesterday I was able to check a prabclus noLD error on rhub, but no luck yet
> with fpc.
>
> Thanks a lot,
>
> Christian
>
> --
> Christian Hennig
> Dipartimento di Scienze Statistiche "Paolo Fortunati",
> Universita di Bologna, phone +39 05120 98163
> christian.hen...@unibo.it<mailto:christian.hen...@unibo.it>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-package-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-package-devel
--
Christian Hennig
Dipartimento di Scienze Statistiche "Paolo Fortunati",
Universita di Bologna, phone +39 05120 98163
christian.hen...@unibo.it
______________________________________________
R-package-devel@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-package-devel
