Hi there,
I'm trying to track down some errors and issues of my fpc package. As I can't
reproduce any of these on my machine, I'm using rhub and docker.
I'm getting Bioconductor related issues with both
local_check_linux("fpc_2.2-3.tar.gz", image = "rhub/debian-clang-devel")
and
rhub::check("fpc_2.2-3.tar.gz", platform = "debian-clang-devel")
namely locally:
>
source('https://bioconductor.org/biocLite.R')
Error: With R version 3.5 or greater, install Bioconductor packages using
BiocManager; see https://bioconductor.org/install
Execution halted
Error in run(bash, c(file.path(wd, "rhub-linux.sh"), args), echo = TRUE, :
System command error
...and on rhub:
91<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L91>#>
Error: package or namespace load failed for 'BiocManager':
92<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L92>#>
.onAttach failed in attachNamespace() for 'BiocManager', details:
93<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L93>#>
call: if (version[, 1:2] != version) return(sprintf("version '%s' must have
two components, e.g., '3.7'",
94<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L94>#>
error: argument is of length zero
95<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L95>#>
Error: loading failed
96<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L96>#>
Execution halted
97<https://builder.r-hub.io/status/fpc_2.2-3.tar.gz-2492f95fc1c94fcbbff4d6f47cb423f8#L97>#>
ERROR: loading failed
(To be totally honest, I'm not even sure whether the latter rhub issue doesn't
refer to the local docker thing as well, because this was linked from an R-hub
builder PREPERROR email, it also mentions docker, and all the time indications
don't make it unambiguously clear to what build they refer.)
Not sure what to do about this. Are there any other options apart from
rhub/docker to get wiser about my errors and issues (error on debian-clang in a
routine that shows nothing suspicious on my machine, additional issues
ATLAS<https://www.stats.ox.ac.uk/pub/bdr/Rblas/ATLAS/fpc.out>
MKL<https://www.stats.ox.ac.uk/pub/bdr/Rblas/MKL/fpc.out>
noLD<https://www.stats.ox.ac.uk/pub/bdr/noLD/fpc.out>
OpenBLAS)?<https://www.stats.ox.ac.uk/pub/bdr/Rblas/OpenBLAS/fpc.out>
Yesterday I was able to check a prabclus noLD error on rhub, but no luck yet
with fpc.
Thanks a lot,
Christian
--
Christian Hennig
Dipartimento di Scienze Statistiche "Paolo Fortunati",
Universita di Bologna, phone +39 05120 98163
christian.hen...@unibo.it<mailto:christian.hen...@unibo.it>
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