rgb is from package grDevices not package base. On Thu, 5 Dec 2019 at 2:48 pm, Dalgleish, James (NIH/NCI) [V] via R-package-devel <r-package-devel@r-project.org> wrote:
> Question: > > NIPTeR is experiencing new warnings when loading Biostrings. I have the > exact same warnings with my package, CNVScope. > > It seems a little odd that the base function rgb cannot be found. What can > cause a base package to not be found? I can't replicate this issue on > either of my linux or windows machines or on winbuilder. > > I have already asked the Bioconductor community, but didn't get a response > (https://support.bioconductor.org/p/126878/). > > Thanks, > James Dalgleish > Maintainer, CNVScope > NIH/NCI > Source: https://cran.r-project.org/web/checks/check_results_NIPTeR.html > Check Details > Version: 1.0.2 > Check: whether the package can be unloaded cleanly > Result: WARN > Error: package or namespace load failed for 'NIPTeR': > .onLoad failed in loadNamespace() for 'Biostrings', details: > call: rgb(1, 1, 1) > error: could not find function "rgb" > Execution halted > Flavor: r-devel-linux-x86_64-debian-clang > > Version: 1.0.2 > Check: whether the namespace can be loaded with stated dependencies > Result: WARN > Error: .onLoad failed in loadNamespace() for 'Biostrings', details: > call: rgb(1, 1, 1) > error: could not find function "rgb" > Execution halted > > A namespace must be able to be loaded with just the base namespace > loaded: otherwise if the namespace gets loaded by a saved object, the > session will be unable to start. > > Probably some imports need to be declared in the NAMESPACE file. > Flavor: r-devel-linux-x86_64-debian-clang > > Version: 1.0.2 > Check: dependencies in R code > Result: NOTE > Error: package or namespace load failed for 'NIPTeR': > .onLoad failed in loadNamespace() for 'Biostrings', details: > call: rgb(1, 1, 1) > error: could not find function "rgb" > Call sequence: > 6: stop(msg, call. = FALSE, domain = NA) > 5: value[[3L]](cond) > 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) > 3: tryCatchList(expr, classes, parentenv, handlers) > 2: tryCatch({ > attr(package, "LibPath") <- which.lib.loc > ns <- loadNamespace(package, lib.loc) > env <- attachNamespace(ns, pos = pos, deps, exclude, include.only) > }, error = function(e) { > P <- if (!is.null(cc <- conditionCall(e))) > paste(" in", deparse(cc)[1L]) > else "" > msg <- gettextf("package or namespace load failed for %s%s:\n %s", > sQuote(package), P, conditionMessage(e)) > if (logical.return) > message(paste("Error:", msg), domain = NA) > else stop(msg, call. = FALSE, domain = NA) > }) > 1: library(package, lib.loc = lib.loc, character.only = T > Execution halted > Flavor: r-devel-linux-x86_64-debian-clang > > Version: 1.0.2 > Check: R code for possible problems > Result: NOTE > Error: .onLoad failed in loadNamespace() for 'Biostrings', details: > call: rgb(1, 1, 1) > error: could not find function "rgb" > Execution halted > Flavor: r-devel-linux-x86_64-debian-clang > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-package-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-package-devel > [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
