Question: NIPTeR is experiencing new warnings when loading Biostrings. I have the exact same warnings with my package, CNVScope.
It seems a little odd that the base function rgb cannot be found. What can cause a base package to not be found? I can't replicate this issue on either of my linux or windows machines or on winbuilder. I have already asked the Bioconductor community, but didn't get a response (https://support.bioconductor.org/p/126878/). Thanks, James Dalgleish Maintainer, CNVScope NIH/NCI Source: https://cran.r-project.org/web/checks/check_results_NIPTeR.html Check Details Version: 1.0.2 Check: whether the package can be unloaded cleanly Result: WARN Error: package or namespace load failed for 'NIPTeR': .onLoad failed in loadNamespace() for 'Biostrings', details: call: rgb(1, 1, 1) error: could not find function "rgb" Execution halted Flavor: r-devel-linux-x86_64-debian-clang Version: 1.0.2 Check: whether the namespace can be loaded with stated dependencies Result: WARN Error: .onLoad failed in loadNamespace() for 'Biostrings', details: call: rgb(1, 1, 1) error: could not find function "rgb" Execution halted A namespace must be able to be loaded with just the base namespace loaded: otherwise if the namespace gets loaded by a saved object, the session will be unable to start. Probably some imports need to be declared in the NAMESPACE file. Flavor: r-devel-linux-x86_64-debian-clang Version: 1.0.2 Check: dependencies in R code Result: NOTE Error: package or namespace load failed for 'NIPTeR': .onLoad failed in loadNamespace() for 'Biostrings', details: call: rgb(1, 1, 1) error: could not find function "rgb" Call sequence: 6: stop(msg, call. = FALSE, domain = NA) 5: value[[3L]](cond) 4: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 3: tryCatchList(expr, classes, parentenv, handlers) 2: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns <- loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos, deps, exclude, include.only) }, error = function(e) { P <- if (!is.null(cc <- conditionCall(e))) paste(" in", deparse(cc)[1L]) else "" msg <- gettextf("package or namespace load failed for %s%s:\n %s", sQuote(package), P, conditionMessage(e)) if (logical.return) message(paste("Error:", msg), domain = NA) else stop(msg, call. = FALSE, domain = NA) }) 1: library(package, lib.loc = lib.loc, character.only = T Execution halted Flavor: r-devel-linux-x86_64-debian-clang Version: 1.0.2 Check: R code for possible problems Result: NOTE Error: .onLoad failed in loadNamespace() for 'Biostrings', details: call: rgb(1, 1, 1) error: could not find function "rgb" Execution halted Flavor: r-devel-linux-x86_64-debian-clang [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
