Dear Uwe, I've tried again today and still get the same error Any suggestions of a likely cause? I'm currently not even sure how to chase it up if it is a fault at my end.
Thanks in advance, Andy On Fri, 1 Dec 2017 at 10:02 Andrew Holding <an...@cam.ac.uk> wrote: > Dear Henrik, > > My undesranding is that rdevel testing servers using are ahead of the > current Bioconductor release. However; I’m not confident I am correct. > > Andy > > On Thu, 30 Nov 2017 at 23:26 Henrik Bengtsson <henrik.bengts...@gmail.com> > wrote: > >> >> On 30.11.2017 12:52, Andrew Holding wrote: >> >> [...] I know the new Bioconductor on devel is unstable [...] >> >> Does CRAN support packages in the Bioconductor *devel* repository? >> >> /Henrik >> >> On Thu, Nov 30, 2017 at 2:54 PM, Andrew Holding <an...@cam.ac.uk> wrote: >> > Dear Uwe, >> > >> > Just submitted the package again and got the same error. I’ve copied it >> > below for reference. >> > >> > Andy >> > >> > Found the following significant warnings: >> > >> > Warning: namespace 'BiocFileCache' is not available and has been >> replaced >> > Warning: namespace 'AnnotationFilter' is not available and has been >> replaced >> > Warning: namespace 'Organism.dplyr' is not available and has been >> replaced >> > See 'd:/RCompile/CRANincoming/R-devel/Brundle.Rcheck/00install.out' for >> details. >> > >> > >> > On Thu, 30 Nov 2017 at 22:18 Uwe Ligges < >> lig...@statistik.tu-dortmund.de> >> > wrote: >> > >> >> Have you submitted a second time? Sounds like BioC wasa uodated on the >> >> build machine when you submitted. >> >> >> >> Best, >> >> Uwe Ligges >> >> >> >> >> >> >> >> On 30.11.2017 12:52, Andrew Holding wrote: >> >> > Hi all, >> >> > >> >> > I’m trying to upload a new version of my package and it was >> automatically >> >> > bounced because of the following warnings: >> >> > >> >> > Warning: namespace 'BiocFileCache' is not available and has been >> replaced >> >> > >> >> > Warning: namespace 'AnnotationFilter' is not available and has been >> >> replaced >> >> > >> >> > Warning: namespace 'Organism.dplyr' is not available and has been >> >> replaced >> >> > >> >> > >> >> > Theses all seem to be related to the bioconductor annotation in one >> of >> >> the >> >> > loaded packages. I know the new Bioconductor on devel is unstable >> but I >> >> > thought I should check before suggesting the pretest rejection was a >> >> false >> >> > positive to see if there was a resolution. >> >> > >> >> > Cheers, >> >> > >> >> > Andy >> >> > >> >> >> > -- >> > Dr Andrew Holding >> > Fellow of Biochemistry / Senior Research Associate >> > Downing College / Cancer Research UK Cambridge Institute >> > CRUK CI: 01223 769696 >> > Mobile: 07595 666459 >> > >> > [[alternative HTML version deleted]] >> > >> > ______________________________________________ >> > R-package-devel@r-project.org mailing list >> > https://stat.ethz.ch/mailman/listinfo/r-package-devel >> > -- > Dr Andrew Holding > Fellow of Biochemistry / Senior Research Associate > Downing College / Cancer Research UK Cambridge Institute > CRUK CI: 01223 769696 > Mobile: 07595 666459 > -- Dr Andrew Holding Fellow of Biochemistry / Senior Research Associate Downing College / Cancer Research UK Cambridge Institute CRUK CI: 01223 769696 Mobile: 07595 666459 [[alternative HTML version deleted]] ______________________________________________ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
