Hi,
I found my mistake after a week and yeah the above code by Mario works. I
apologize for my previous post which says that it does not work. It was my
fault as I made a blunder. Thanks a lot for the same.
I am trying to redirect my output generated through my R script in the shell
script by using :
R --slave -f your-script.r --args the-filename-to-be-read.dat > out1.txt
but, it does not direct the output to the file rather it shows me the output
on the on shell window. I am not sure why I am not getting it. Can you
please help me in this regard ?
Thanks again. I appreciate your help.
Regards,
Ayush
On Sun, Apr 18, 2010 at 1:43 PM, Mario Valle <mva...@cscs.ch> wrote:
> av <- commandArgs(TRUE)
> if(length(av) < 1) stop("Missing argument")
> r <- read.table(av[1])
>
> Then call your script as:
>
> R --slave -f your-script.r --args the-filename-to-be-read.dat
>
> Hope it helps
> mario
>
>
>
> On 18-Apr-10 18:57, Ayush Raman wrote:
>
>> Hi all,
>>
>> I am trying to call the R script/ R Program via my Shell Script. I need to
>> pass a file to the R script as an argument. When I am trying to do that I
>> am
>> getting error and only first line of the file is being read. Can you tell
>> me
>> how should I do that so that it reads the entire file in a R object so
>> that
>> later I am able to process the matrix operation on that file. It is a tab
>> delimited file.
>>
>> Thanks.
>>
>>
> --
> Ing. Mario Valle
> Data Analysis and Visualization Group |
> http://www.cscs.ch/~mvalle <http://www.cscs.ch/%7Emvalle>
> Swiss National Supercomputing Centre (CSCS) | Tel: +41 (91) 610.82.60
> v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax: +41 (91) 610.82.82
>
--
Regards,
Ayush Raman
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