Yeah, it is in the right directory and I am sure about it.
Ayush
On Sun, Apr 18, 2010 at 8:58 PM, jim holtman <jholt...@gmail.com> wrote:
> If it is the script file, are you in the right directory. The error
> indicates the system can not locate your program. Try typing it in by hand
> and see what you get. You are probably not positioned where you think you
> are.
>
> On Sun, Apr 18, 2010 at 6:21 PM, Ayush Raman <ayushra...@gmail.com> wrote:
>
>> Hi,
>>
>> Thanks for the advice but now I am getting an error which states that the
>> R
>> file/script cannot be opened. Also, my shell and R script is in an
>> executable mode.
>>
>> My code is as follows:
>>
>> #!/bin/bash
>>
>> DataFile="input.txt"
>> RProgram="Debug5.R"
>> outputfile="output_perl_${I}${I}"
>>
>> time R --slave -f ${RProgram} --args ${DataFile} > ${outputfile}
>>
>> Regards,
>> Ayush
>>
>> ---------- Forwarded message ----------
>> From: Mario Valle <mva...@cscs.ch>
>> Date: Sun, Apr 18, 2010 at 1:43 PM
>> Subject: Re: [R] Table or file as STDIN to the R Script
>> To: Ayush Raman <ayushra...@gmail.com>
>>
>>
>> av <- commandArgs(TRUE)
>> if(length(av) < 1) stop("Missing argument")
>> r <- read.table(av[1])
>>
>> Then call your script as:
>>
>> R --slave -f your-script.r --args the-filename-to-be-read.dat
>>
>> Hope it helps
>> mario
>>
>>
>>
>> On 18-Apr-10 18:57, Ayush Raman wrote:
>>
>> > Hi all,
>> >
>> > I am trying to call the R script/ R Program via my Shell Script. I need
>> to
>> > pass a file to the R script as an argument. When I am trying to do that
>> I
>> > am
>> > getting error and only first line of the file is being read. Can you
>> tell
>> > me
>> > how should I do that so that it reads the entire file in a R object so
>> that
>> > later I am able to process the matrix operation on that file. It is a
>> tab
>> > delimited file.
>> >
>> > Thanks.
>> >
>> >
>> --
>> Ing. Mario Valle
>> Data Analysis and Visualization Group |
>> http://www.cscs.ch/~mvalle <http://www.cscs.ch/%7Emvalle> <
>> http://www.cscs.ch/%7Emvalle>
>>
>> Swiss National Supercomputing Centre (CSCS) | Tel: +41 (91)
>> 610.82.60
>> v. Cantonale Galleria 2, 6928 Manno, Switzerland | Fax: +41 (91)
>> 610.82.82
>>
>>
>>
>> --
>> Regards,
>> Ayush Raman
>>
>> [[alternative HTML version deleted]]
>>
>> ______________________________________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html<http://www.r-project.org/posting-guide.html>
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
>
>
> --
> Jim Holtman
> Cincinnati, OH
> +1 513 646 9390
>
> What is the problem that you are trying to solve?
>
--
Regards,
Ayush Raman
[[alternative HTML version deleted]]
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