Perhaps read the Posting Guide, note that there is a special mailing list for MacOSX-specific questions, and post there instead?
You don't appear to have installed gfortran. I am aware that there are specific instructions for getting that installed in MacOS that you need to find and follow [1]. [1] https://cran.r-project.org/bin/macosx/tools/ On April 23, 2023 4:41:59 AM GMT+09:00, varin sacha via R-help <r-help@r-project.org> wrote: >Me again ! How to solve this? > >At the end of this page there is the installation command : >https://gitlab.science.ru.nl/gbucur/RUcausal/-/blob/master/README.Rmd > >Working with a MAC, I have tried to install the RUcausal library (copy and >paste the installation command). > >It is written that the package has been built on Linux using the GNU Compiler >Collection. To install the package, open an R instance and run: >install.packages('devtools') # required package >devtools::install_git('https://gitlab.science.ru.nl/gbucur/RUcausal') > >I get this error message : > > ERROR: package installation failed >Error: Failed to install 'RUcausal' from Git: > ! System command 'R' failed >0d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal’ > > > >install.packages('devtools') # required package >--- Please select a CRAN mirror for use in this session --- >trying URL >'https://stat.ethz.ch/CRAN/bin/macosx/big-sur-arm64/contrib/4.2/devtools_2.4.5.tgz' >Content type 'application/x-gzip' length 421790 bytes (411 KB) >================================================== >downloaded 411 KB > > >The downloaded binary packages are in > >/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T//Rtmp7SUtUd/downloaded_packages >> devtools::install_git('https://gitlab.science.ru.nl/gbucur/RUcausal') >Downloading git repo https://gitlab.science.ru.nl/gbucur/RUcausal >'/usr/bin/git' clone --depth 1 --no-hardlinks >https://gitlab.science.ru.nl/gbucur/RUcausal >/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T//Rtmp7SUtUd/file61a2a8e336a >── R CMD build >────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── >─ installing the package to process help pages > -----------------------------------ges >─ installing *source* package ‘RUcausal’ ... > ** using staged installation > ** libs > clang++ -arch arm64 -std=gnu++14 >-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG >-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' > >-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include' > -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall >-pedantic -c RcppExports.cpp -o RcppExports.o > clang++ -arch arm64 -std=gnu++14 >-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG >-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include' > >-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include' > -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall >-pedantic -c compute_DAG_probabilities_BGe_fast.cpp -o >compute_DAG_probabilities_BGe_fast.o > clang++ -arch arm64 -std=gnu++14 -dynamiclib >-Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module >-multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib >-L/opt/R/arm64/lib -o RUcausal.so RcppExports.o >compute_DAG_probabilities_BGe_fast.o >-L/Library/Frameworks/R.framework/Resources/lib -lRlapack >-L/Library/Frameworks/R.framework/Resources/lib -lRblas >-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1 >-L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath >-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework >-Wl,CoreFoundation > ld: warning: directory not found for option >'-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1' > ld: warning: directory not found for option '-L/opt/R/arm64/gfortran/lib' > ld: library not found for -lgfortran > clang: error: linker command failed with exit code 1 (use -v to see >invocation) > make: *** [RUcausal.so] Error 1 > ERROR: compilation failed for package ‘RUcausal’ >─ removing >‘/private/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal’ > ----------------------------------- > ERROR: package installation failed >Error: Failed to install 'RUcausal' from Git: > ! System command 'R' failed >0d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal’ > >______________________________________________ >R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code. -- Sent from my phone. Please excuse my brevity. ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
