Me again ! How to solve this?
At the end of this page there is the installation command :
https://gitlab.science.ru.nl/gbucur/RUcausal/-/blob/master/README.Rmd
Working with a MAC, I have tried to install the RUcausal library (copy and
paste the installation command).
It is written that the package has been built on Linux using the GNU Compiler
Collection. To install the package, open an R instance and run:
install.packages('devtools') # required package
devtools::install_git('https://gitlab.science.ru.nl/gbucur/RUcausal')
I get this error message :
ERROR: package installation failed
Error: Failed to install 'RUcausal' from Git:
! System command 'R' failed
0d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal’
install.packages('devtools') # required package
--- Please select a CRAN mirror for use in this session ---
trying URL
'https://stat.ethz.ch/CRAN/bin/macosx/big-sur-arm64/contrib/4.2/devtools_2.4.5.tgz'
Content type 'application/x-gzip' length 421790 bytes (411 KB)
==================================================
downloaded 411 KB
The downloaded binary packages are in
/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T//Rtmp7SUtUd/downloaded_packages
> devtools::install_git('https://gitlab.science.ru.nl/gbucur/RUcausal')
Downloading git repo https://gitlab.science.ru.nl/gbucur/RUcausal
'/usr/bin/git' clone --depth 1 --no-hardlinks
https://gitlab.science.ru.nl/gbucur/RUcausal
/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T//Rtmp7SUtUd/file61a2a8e336a
── R CMD build
──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
─ installing the package to process help pages
-----------------------------------ges
─ installing *source* package ‘RUcausal’ ...
** using staged installation
** libs
clang++ -arch arm64 -std=gnu++14
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic
-c RcppExports.cpp -o RcppExports.o
clang++ -arch arm64 -std=gnu++14
-I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/Rcpp/include'
-I'/Library/Frameworks/R.framework/Versions/4.2-arm64/Resources/library/RcppArmadillo/include'
-I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -Wall -pedantic
-c compute_DAG_probabilities_BGe_fast.cpp -o
compute_DAG_probabilities_BGe_fast.o
clang++ -arch arm64 -std=gnu++14 -dynamiclib -Wl,-headerpad_max_install_names
-undefined dynamic_lookup -single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o
RUcausal.so RcppExports.o compute_DAG_probabilities_BGe_fast.o
-L/Library/Frameworks/R.framework/Resources/lib -lRlapack
-L/Library/Frameworks/R.framework/Resources/lib -lRblas
-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1
-L/opt/R/arm64/gfortran/lib -lgfortran -lemutls_w -lquadmath
-F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework
-Wl,CoreFoundation
ld: warning: directory not found for option
'-L/opt/R/arm64/gfortran/lib/gcc/aarch64-apple-darwin20.6.0/12.0.1'
ld: warning: directory not found for option '-L/opt/R/arm64/gfortran/lib'
ld: library not found for -lgfortran
clang: error: linker command failed with exit code 1 (use -v to see
invocation)
make: *** [RUcausal.so] Error 1
ERROR: compilation failed for package ‘RUcausal’
─ removing
‘/private/var/folders/t_/myv0vvms11g40d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal’
-----------------------------------
ERROR: package installation failed
Error: Failed to install 'RUcausal' from Git:
! System command 'R' failed
0d0bz2p4xg640000gn/T/RtmpMs1teQ/Rinst6453ee77bb8/RUcausal’
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