<oops, this got sent as reply to Andrew only> Andrew Robinson wrote:
In your data, subject is nested within sequence. Was that your intention?
Presumably yes. This looks like a standard cross-over design. I fail to see what the interaction between subject and sequence might mean, so I also have no idea what SPSS might have done. (The list does not allow .doc attachments). Since this is a balanced design, you can get almost the right analysis by
m <- lm(Max ~ sequence + subject + period +
+ drug, data=Data)
anova(m)
Analysis of Variance Table Response: Max Df Sum Sq Mean Sq F value Pr(>F) sequence 1 585 585 0.0160 0.9014 subject 12 634325 52860 1.4469 0.2660 period 1 63175 63175 1.7293 0.2131 drug 1 58149 58149 1.5917 0.2311 Residuals 12 438395 36533 in which you have to know that sequence is aliased with the drug:period interaction, AND that it needs to be compared with the intersubject variation. I.e. the F test is wrong and should be replaced with F= 585/52860 = 0.011on 1 and 12 df. However, a better way is
summary(aov(Max ~ period*drug + Error(subject), data=Data))
Error: subject Df Sum Sq Mean Sq F value Pr(>F) period:drug 1 585 585 0.0111 0.918 Residuals 12 634325 52860 Error: Within Df Sum Sq Mean Sq F value Pr(>F) period 1 63175 63175 1.7293 0.2131 drug 1 58149 58149 1.5917 0.2311 Residuals 12 438395 36533 -- O__ ---- Peter Dalgaard Ă˜ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 ______________________________________________ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.