On May 13, 2015, at 3:45 PM, Juan Fernandez wrote: > Dear List > > I am trying to do an association network using some expression data I have, > the data is really huge: 300 samples and ~30,000 genes. I would like to apply > a gaussian graphical model to my data using the huge R package. > > Here is the code I am using > >> dim(data) > #[1] 317 32200 > >> huge.out <- huge.npn(data) >> huge.stars <- huge.select(huge.out, criterion=“stars”) > > However in this last step I got the following error: > > Error in cor(x) : sampling…..in progress:10% > Missing values present in input variable ‘x’. Consider using use = > ‘pairwise.complete.obs’
Responded on StackOverflow where this duplicate question was posted yesterday -- David. > > Any help would be very appreciated > > Juan > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. David Winsemius Alameda, CA, USA ______________________________________________ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
