Dear List
I am trying to do an association network using some expression data I have, the
data is really huge: 300 samples and ~30,000 genes. I would like to apply a
gaussian graphical model to my data using the huge R package.
Here is the code I am using
> dim(data)
#[1] 317 32200
> huge.out <- huge.npn(data)
> huge.stars <- huge.select(huge.out, criterion=“stars”)
However in this last step I got the following error:
Error in cor(x) : sampling…..in progress:10%
Missing values present in input variable ‘x’. Consider using use =
‘pairwise.complete.obs’
Any help would be very appreciated
Juan
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