If you have properly installed the plantbreeding package, then each time
you start R, you need to type:
library(plantbreeding)
before you can access the data or the functions in the package.
Kevin
On Sat, Aug 17, 2013 at 12:18 AM, Waqas Shafqat <waqas1...@gmail.com> wrote:
> ---------- Forwarded message ----------
> From: Waqas Shafqat <waqas1...@gmail.com>
> Date: Sat, Aug 17, 2013 at 10:18 AM
> Subject: Re: [R] about plantbreeding library
> To: Marc Girondot <marc_...@yahoo.fr>
>
>
> problem 1
> stability analysis
>
> >setwd("E:/")
> > Data <- read.table(file="setwd.csv", header=TRUE, sep=",")
> >
> > Data
> environments genotypes relication yield
> 1 1 1 1 34
> 2 1 1 2 35
> 3 1 1 3 33
> 4 1 2 1 43
> 5 1 2 2 43
> 6 1 2 3 44
> 7 1 3 1 56
> 8 1 3 2 57
> 9 1 3 3 54
> 10 2 1 1 32
> 11 2 1 2 33
> 12 2 1 3 31
> 13 2 2 1 44
> 14 2 2 2 46
> 15 2 2 3 48
> 16 2 3 1 58
> 17 2 3 2 57
> 18 2 3 3 59
> 19 3 1 1 44
> 20 3 1 2 45
> 21 3 1 3 47
> 22 3 2 1 55
> 23 3 2 2 56
> 24 3 2 3 57
> 25 3 3 1 60
> 26 3 3 2 61
> 27 3 3 3 63
> > # stability analysis
> > data(multienv)
> Warning message:
> In data(multienv) : data set multienv not found
> > out <- stability (dataframe = multienv , yvar = "yield", genotypes =
> "genotypes",
> + environments = "environments", replication = "replication")
> Error: could not find function "stability"
> > out
> Error: object 'out' not found
> >
> above errors are found in stability analysis)
>
> problem 2
> diallel
>
> > setwd("E:/")
> > Data <- read.table(file="setwd.csv", header=TRUE, sep=",")
> >
> > Data
> Days.Taken.to.Tesselling X X.1 X.2 Days.Taken.to.Silking X.3 X.4 X.5
> 1 Crosses R1 R2 R3 R1 R2 R3 NA
> 2 A 545 52 54 52 58 59 58 NA
> 3 OH 28 54 53 53 59 60 59 NA
> 4 OH 54-3A 56 56 55 62 61 63 NA
> 5 WF 9 54 52 53 60 58 59 NA
> 6 B 42 53 55 54 61 62 61 NA
> 7 N 48-1 55 53 52 61 60 60 NA
> 8 PB 7-1 55 56 56 62 62 63 NA
> 9 52 B4 56 54 56 60 59 60 NA
> 10 A 545 x OH 28 53 52 52 56 58 56 NA
> 11 A 545 x OH 54-3A 55 55 53 60 59 61 NA
> 12 A 545 x WF 9 56 57 56 62 63 63 NA
> 13 A 545 x B 42 53 52 53 59 60 59 NA
> 14 A 545 x N 48-1 54 52 53 61 60 60 NA
> 15 A 545 x PB 7-1 55 57 56 63 62 62 NA
> 16 A 545 x 52 B4 58 56 56 65 64 64 NA
> 17 OH 28 x A 545 53 53 52 61 60 61 NA
> 18 OH 28 x OH 54-3A 50 52 52 59 58 58 NA
> 19 OH 28 x WF 9 55 55 56 64 63 63 NA
> 20 OH 28 x B 42 51 53 53 57 58 57 NA
> 21 OH 28 x N 48-1 54 54 54 60 60 59 NA
> 22 OH 28 x PB 7-1 58 57 57 65 65 64 NA
> 23 OH 28 x 52 B4 53 52 53 59 60 59 NA
> 24 OH 54-3A x A 545 54 56 56 63 62 62 NA
> 25 OH 54-3A x OH 28 53 54 54 59 60 60 NA
> 26 OH 54-3A x WF 9 51 52 52 59 58 58 NA
> 27 OH 54-3A x B 42 52 52 54 60 61 60 NA
> 28 OH 54-3A x N 48-1 55 55 56 63 62 63 NA
> 29 OH 54-3A x PB 7-1 54 54 56 62 62 63 NA
> 30 OH 54-3A x 52 B4 51 53 52 57 58 57 NA
> 31 WF 9 x A 545 57 58 57 65 64 64 NA
> 32 WF 9 x OH 28 54 53 53 62 61 61 NA
> 33 WF 9 x OH 54-3A 56 56 56 64 63 64 NA
> 34 WF 9 x B 42 56 54 54 60 61 60 NA
> 35 WF 9 x N 48-1 53 51 51 59 58 58 NA
> 36 WF 9 x PB 7-1 56 55 55 62 61 62 NA
> 37 WF 9 x 52 B4 52 55 54 60 59 59 NA
> 38 B 42 x A 545 53 53 53 60 61 59 NA
> 39 B 42 x OH 28 57 56 57 65 64 65 NA
> 40 B 42 x OH 54-3A 53 55 55 62 61 62 NA
> 41 B 42 x WF 9 51 52 51 58 59 58 NA
> 42 B 42 x N 48-1 53 56 53 62 61 60 NA
> 43 B 42 x PB 7-1 55 55 56 63 62 63 NA
> 44 B 42 x 52 B4 56 58 58 64 63 63 NA
> 45 N 48-1 x A 545 52 51 51 57 56 58 NA
> 46 N 48-1 x OH 28 56 55 55 61 60 60 NA
> 47 N 48-1 x OH 54-3A 58 58 58 66 65 66 NA
> 48 N 48-1 x WF 9 54 56 54 59 60 60 NA
> 49 N 48-1 x B 42 56 56 58 63 62 63 NA
> 50 N 48-1 x PB 7-1 52 53 52 59 58 58 NA
> 51 N 48-1 x 52 B4 56 58 58 64 63 63 NA
> 52 PB 7-1 x A 545 54 54 53 61 62 61 NA
> 53 PB 7-1 x OH 28 51 51 51 57 58 58 NA
> 54 PB 7-1 x OH 54-3A 55 57 57 62 63 63 NA
> 55 PB 7-1 x WF 9 54 54 53 59 60 59 NA
> 56 PB 7-1 x B 42 52 52 53 59 58 59 NA
> 57 PB 7-1 x N 48-1 56 57 57 63 63 64 NA
> 58 PB 7-1 x 52 B4 56 58 58 65 64 64 NA
> 59 52 B4 x A 545 54 52 54 61 60 60 NA
> 60 52 B4 x OH 28 51 53 53 60 60 59 NA
> 61 52 B4 x OH 54-3A 55 56 57 64 63 64 NA
> 62 52 B4 x WF 9 58 57 58 65 66 65 NA
> 63 52 B4 x B 42 54 56 54 63 62 63 NA
> 64 52 B4 x N 48-1 58 56 56 63 64 64 NA
> 65 52 B4 x PB 7-1 53 54 53 59 60 60 NA
> 66 NA
> > data(fulldial)
> Warning message:
> In data(fulldial) : data set fulldial not found
> > out <-diallele1(dataframe = fulldial, male = "MALE", female = "FEMALE",
> + progeny = "TRT", replication = "REP", yvar = "YIELD" )
> Error: could not find function "diallele1"
> > print(out)
> Error in print(out) : object 'out' not found
> >
> (above error found in diallel)
>
>
> On Sat, Aug 17, 2013 at 12:56 AM, Marc Girondot <marc_...@yahoo.fr> wrote:
>
> > Le 16/08/13 19:48, Waqas Shafqat a écrit :
> >
> >> Sir i have successfully installed plant breeding library following the
> >> procedure on the web..
> >>
> >> but problem is that plantbreeding library does not working
> >>
> >> I have tried it in both version i.e RGui 3.0.0 and RGui 3.0.1.
> >>
> >> please guide me
> >>
> >> [[alternative HTML version deleted]]
> >>
> >> ______________________________**________________
> >> R-help@r-project.org mailing list
> >> https://stat.ethz.ch/mailman/**listinfo/r-help<
> https://stat.ethz.ch/mailman/listinfo/r-help>
> >> PLEASE do read the posting guide http://www.R-project.org/**
> >> posting-guide.html <http://www.R-project.org/posting-guide.html>
> >> and provide commented, minimal, self-contained, reproducible code.
> >>
> >> You should read the posting guidelines. http://www.r-project.org/**
> > posting-guide.html <http://www.r-project.org/posting-guide.html>
> > Give a reproducible example to show what you try to do and why it does
> not
> > work.
> > Sincerely
> >
> > Marc Girondot
> >
> > --
> > ______________________________**____________________________
> > Marc Girondot, Pr
> >
> > Laboratoire Ecologie, Systématique et Evolution
> > Equipe de Conservation des Populations et des Communautés
> > CNRS, AgroParisTech et Université Paris-Sud 11 , UMR 8079
> > Bâtiment 362
> > 91405 Orsay Cedex, France
> >
> > Tel: 33 1 (0)1.69.15.72.30 Fax: 33 1 (0)1.69.15.73.53
> > e-mail: marc.giron...@u-psud.fr
> > Web: http://www.ese.u-psud.fr/epc/**conservation/Marc.html<
> http://www.ese.u-psud.fr/epc/conservation/Marc.html>
> > Skype: girondot
> >
> >
>
> [[alternative HTML version deleted]]
>
>
> ______________________________________________
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
>
--
Kevin Wright
[[alternative HTML version deleted]]
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
