---------- Forwarded message ----------
From: Waqas Shafqat <waqas1...@gmail.com>
Date: Sat, Aug 17, 2013 at 10:18 AM
Subject: Re: [R] about plantbreeding library
To: Marc Girondot <marc_...@yahoo.fr>
problem 1
stability analysis
>setwd("E:/")
> Data <- read.table(file="setwd.csv", header=TRUE, sep=",")
>
> Data
environments genotypes relication yield
1 1 1 1 34
2 1 1 2 35
3 1 1 3 33
4 1 2 1 43
5 1 2 2 43
6 1 2 3 44
7 1 3 1 56
8 1 3 2 57
9 1 3 3 54
10 2 1 1 32
11 2 1 2 33
12 2 1 3 31
13 2 2 1 44
14 2 2 2 46
15 2 2 3 48
16 2 3 1 58
17 2 3 2 57
18 2 3 3 59
19 3 1 1 44
20 3 1 2 45
21 3 1 3 47
22 3 2 1 55
23 3 2 2 56
24 3 2 3 57
25 3 3 1 60
26 3 3 2 61
27 3 3 3 63
> # stability analysis
> data(multienv)
Warning message:
In data(multienv) : data set multienv not found
> out <- stability (dataframe = multienv , yvar = "yield", genotypes =
"genotypes",
+ environments = "environments", replication = "replication")
Error: could not find function "stability"
> out
Error: object 'out' not found
>
above errors are found in stability analysis)
problem 2
diallel
> setwd("E:/")
> Data <- read.table(file="setwd.csv", header=TRUE, sep=",")
>
> Data
Days.Taken.to.Tesselling X X.1 X.2 Days.Taken.to.Silking X.3 X.4 X.5
1 Crosses R1 R2 R3 R1 R2 R3 NA
2 A 545 52 54 52 58 59 58 NA
3 OH 28 54 53 53 59 60 59 NA
4 OH 54-3A 56 56 55 62 61 63 NA
5 WF 9 54 52 53 60 58 59 NA
6 B 42 53 55 54 61 62 61 NA
7 N 48-1 55 53 52 61 60 60 NA
8 PB 7-1 55 56 56 62 62 63 NA
9 52 B4 56 54 56 60 59 60 NA
10 A 545 x OH 28 53 52 52 56 58 56 NA
11 A 545 x OH 54-3A 55 55 53 60 59 61 NA
12 A 545 x WF 9 56 57 56 62 63 63 NA
13 A 545 x B 42 53 52 53 59 60 59 NA
14 A 545 x N 48-1 54 52 53 61 60 60 NA
15 A 545 x PB 7-1 55 57 56 63 62 62 NA
16 A 545 x 52 B4 58 56 56 65 64 64 NA
17 OH 28 x A 545 53 53 52 61 60 61 NA
18 OH 28 x OH 54-3A 50 52 52 59 58 58 NA
19 OH 28 x WF 9 55 55 56 64 63 63 NA
20 OH 28 x B 42 51 53 53 57 58 57 NA
21 OH 28 x N 48-1 54 54 54 60 60 59 NA
22 OH 28 x PB 7-1 58 57 57 65 65 64 NA
23 OH 28 x 52 B4 53 52 53 59 60 59 NA
24 OH 54-3A x A 545 54 56 56 63 62 62 NA
25 OH 54-3A x OH 28 53 54 54 59 60 60 NA
26 OH 54-3A x WF 9 51 52 52 59 58 58 NA
27 OH 54-3A x B 42 52 52 54 60 61 60 NA
28 OH 54-3A x N 48-1 55 55 56 63 62 63 NA
29 OH 54-3A x PB 7-1 54 54 56 62 62 63 NA
30 OH 54-3A x 52 B4 51 53 52 57 58 57 NA
31 WF 9 x A 545 57 58 57 65 64 64 NA
32 WF 9 x OH 28 54 53 53 62 61 61 NA
33 WF 9 x OH 54-3A 56 56 56 64 63 64 NA
34 WF 9 x B 42 56 54 54 60 61 60 NA
35 WF 9 x N 48-1 53 51 51 59 58 58 NA
36 WF 9 x PB 7-1 56 55 55 62 61 62 NA
37 WF 9 x 52 B4 52 55 54 60 59 59 NA
38 B 42 x A 545 53 53 53 60 61 59 NA
39 B 42 x OH 28 57 56 57 65 64 65 NA
40 B 42 x OH 54-3A 53 55 55 62 61 62 NA
41 B 42 x WF 9 51 52 51 58 59 58 NA
42 B 42 x N 48-1 53 56 53 62 61 60 NA
43 B 42 x PB 7-1 55 55 56 63 62 63 NA
44 B 42 x 52 B4 56 58 58 64 63 63 NA
45 N 48-1 x A 545 52 51 51 57 56 58 NA
46 N 48-1 x OH 28 56 55 55 61 60 60 NA
47 N 48-1 x OH 54-3A 58 58 58 66 65 66 NA
48 N 48-1 x WF 9 54 56 54 59 60 60 NA
49 N 48-1 x B 42 56 56 58 63 62 63 NA
50 N 48-1 x PB 7-1 52 53 52 59 58 58 NA
51 N 48-1 x 52 B4 56 58 58 64 63 63 NA
52 PB 7-1 x A 545 54 54 53 61 62 61 NA
53 PB 7-1 x OH 28 51 51 51 57 58 58 NA
54 PB 7-1 x OH 54-3A 55 57 57 62 63 63 NA
55 PB 7-1 x WF 9 54 54 53 59 60 59 NA
56 PB 7-1 x B 42 52 52 53 59 58 59 NA
57 PB 7-1 x N 48-1 56 57 57 63 63 64 NA
58 PB 7-1 x 52 B4 56 58 58 65 64 64 NA
59 52 B4 x A 545 54 52 54 61 60 60 NA
60 52 B4 x OH 28 51 53 53 60 60 59 NA
61 52 B4 x OH 54-3A 55 56 57 64 63 64 NA
62 52 B4 x WF 9 58 57 58 65 66 65 NA
63 52 B4 x B 42 54 56 54 63 62 63 NA
64 52 B4 x N 48-1 58 56 56 63 64 64 NA
65 52 B4 x PB 7-1 53 54 53 59 60 60 NA
66 NA
> data(fulldial)
Warning message:
In data(fulldial) : data set fulldial not found
> out <-diallele1(dataframe = fulldial, male = "MALE", female = "FEMALE",
+ progeny = "TRT", replication = "REP", yvar = "YIELD" )
Error: could not find function "diallele1"
> print(out)
Error in print(out) : object 'out' not found
>
(above error found in diallel)
On Sat, Aug 17, 2013 at 12:56 AM, Marc Girondot <marc_...@yahoo.fr> wrote:
> Le 16/08/13 19:48, Waqas Shafqat a écrit :
>
>> Sir i have successfully installed plant breeding library following the
>> procedure on the web..
>>
>> but problem is that plantbreeding library does not working
>>
>> I have tried it in both version i.e RGui 3.0.0 and RGui 3.0.1.
>>
>> please guide me
>>
>> [[alternative HTML version deleted]]
>>
>> ______________________________**________________
>> R-help@r-project.org mailing list
>> https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>> PLEASE do read the posting guide http://www.R-project.org/**
>> posting-guide.html <http://www.R-project.org/posting-guide.html>
>> and provide commented, minimal, self-contained, reproducible code.
>>
>> You should read the posting guidelines. http://www.r-project.org/**
> posting-guide.html <http://www.r-project.org/posting-guide.html>
> Give a reproducible example to show what you try to do and why it does not
> work.
> Sincerely
>
> Marc Girondot
>
> --
> ______________________________**____________________________
> Marc Girondot, Pr
>
> Laboratoire Ecologie, Systématique et Evolution
> Equipe de Conservation des Populations et des Communautés
> CNRS, AgroParisTech et Université Paris-Sud 11 , UMR 8079
> Bâtiment 362
> 91405 Orsay Cedex, France
>
> Tel: 33 1 (0)1.69.15.72.30 Fax: 33 1 (0)1.69.15.73.53
> e-mail: marc.giron...@u-psud.fr
> Web:
> http://www.ese.u-psud.fr/epc/**conservation/Marc.html<http://www.ese.u-psud.fr/epc/conservation/Marc.html>
> Skype: girondot
>
>
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
