On 13-04-24 1:51 PM, Jens Olofsson wrote:
Dear Duncan,
I know this isn't a forum for Cygwin, but for R. Pls treat me as a noob and
also remember I am on Windows. How should I use R CMD SHLIB as if I write
that at the prompt I get the error: unexpected symbol in "R CMD". I have
mango.f95 in the working directory.


That's a command-line command, not something done with R. You can use it from your bash shell if you have R and the Rtools directories on your path, or from the Windows CMD shell.

BTW, my comment wasn't trying to tell you to go to a Cygwin forum, it was telling you that Cygwin's gfortran is unsupported. You need to use the MinGW-64 one that we distribute if you want us to be able to help.

Duncan Murdoch

//Jens



On 24 April 2013 19:46, Duncan Murdoch <murdoch.dun...@gmail.com> wrote:

On 13-04-24 1:36 PM, Jens Olofsson wrote:

Dear users of R
I have a subroutine in Fortran95, compiled to a DLL with gfortran in
Cygwin
4.5.3.


We don't support Cygwin.  You should use the gfortran in Rtools, and get R
to set the command line options for you, either by putting the code in a
package, or by using R CMD SHLIB Mango.f95.

Duncan Murdoch

  The subroutine is:
subroutine MyPBP( S, p, N )
      ! Expose subroutine rtest to users of this DLL
      !DEC$ ATTRIBUTES DLLEXPORT, C, REFERENCE, ALIAS: "mypbp_" ::mypbp
      ! This function computes the Poisson-Binomial distribution
      ! of size N using p
      double precision, intent(inout) :: S(N+1)
      double precision, intent(in) :: p(N)
      integer, intent(in) :: N
      double precision :: X(N+1)
      integer i, j
      !X=0
      !S=0
      X(1) = 1 - p(1)
      X(2) = p(1)
      do i = 2, N
          S(1) = X(1)*(1-p(i))
          do j = 2,i
              S(j) = X(j-1)*p(i) + X(j)*(1-p(i))
          end do
          S(i+1) = X(i)*p(i)
          X = S
          if (i == N) then
              S = X
          end if
      end do
end subroutine MyPBP
and it is saved into Mango.f95
I compile it from the bash shell using: gfortran-4 c- Mango.f95 and
gfortran-4 -shared -o Mango.dll Mango.o
I am on a Windows machine running Windows 7 with Intel i7.
I load the dll in a 32-bit R by dyn.load("Mango.dll"). Using getLoadedDLLs
I can see the DLL. However, is.loaded("Mango.dll") = FALSE. In addition, R
stop responding when I try .Fortran("MyPBP", as.numeric(S), as.numeric(p),
as.integer(N)),
where N<-5, S<-array(0,N+1) and p<- c(0.1, 0.2, 0.5, 0.8, 0.9).

What am I doing wrong?
Any ideas, thoughts and/or comments are highly appreciated.

Jens

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