Hi R helpers... I am having troubles because of the discrepancy
between the dendrogram plotted from hclust and what is wrote in the
hc2Newick file. I've got a matrix C:
hc <- hclust(dist(C))
plot(hc)
with the:
write(hc2Newick(hc),file='test.newick')
both things draw completely different "trees"...
I have also tried with the raw distance matrix D and also the agnes
function, but the same happens. The hclus and agnes dendrogram is
logical, whereas the newick tree is not.
Thanks for any help!
PS> attached C matrix that is a 112x112 matrix
--
Jose Sergio Hleap Lozano, M. Sc.
Ph. D. Student, Dalhousie University
Researcher, SQUALUS Foundation
______________________________________________
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
