Hi R helpers... I am having troubles because of the discrepancy
between the dendrogram plotted from hclust and what is wrote in the
hc2Newick file. I've got a matrix C:
hc <- hclust(dist(C))
plot(hc)
with the:
write(hc2Newick(hc),file='test.newick')
both things draw completely different "trees"...
I have also tried with the raw distance matrix D and also the agnes
function, but the same happens. The hclus and agnes dendrogram is
logical, whereas the newick tree is not.
Thanks for any help!
--
Jose Sergio Hleap Lozano, M. Sc.
Ph. D. Student, Dalhousie University
Researcher, SQUALUS Foundation
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