I forgot to say I need it to work in a for loop because it will be used for
over 35 files. I previously programmed it in the most unorthodox way
possible:
setwd("J:/Stage/Datasets2/Datasets/outData")
data1<-read.table("AR1000900A_N_241110_(Mapping250K_Nsp)_2,Mapping250K_Nsp,CNprobes.tab
_SNP_IDs.xls",sep="\t", dec=",", fill=T, header=T)
bukuA<-read.table("AR1000900A_N_241110_(Mapping250K_Nsp)_2,Mapping250K_Nsp,CNprobes.tab
_SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
bukuB<-read.table("AR1000901A_N_241110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
_SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
bukuC<-read.table("AR1000902A_N_241110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
_SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
bukuD<-read.table("AR1000903A_N_291110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
_SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
bukuE<-read.table("AR1000904A_N_241110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
_SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
bukuA<-data.frame(bukuA)
bukuB<-data.frame(bukuB)
bukuC<-data.frame(bukuC)
bukuD<-data.frame(bukuD)
bukuE<-data.frame(bukuE)
regionMatchA<-cbind(data1, bukuA[match(data1$Pos, bukuA$Pos),])
regionMatchB<-cbind(data1, bukuB[match(data1$Pos, bukuB$Pos),])
regionMatchC<-cbind(data1, bukuC[match(data1$Pos, bukuC$Pos),])
regionMatchD<-cbind(data1, bukuD[match(data1$Pos, bukuD$Pos),])
regionMatchE<-cbind(data1, bukuE[match(data1$Pos, bukuE$Pos),])
regionMatchABCDE<-cbind(data1[,7],data1[,3],
regionMatchA[,10:18],regionMatchB[,10:18],regionMatchC[,10:18],regionMatchD[,10:18],regionMatchE[,10:18])
write.table(regionMatchABCDE, file= "Array0-1-2-3-4-5_0,5 -0,5.xls",
append=F, col.names=T, row.names=F, quote=F, sep = "\t", dec=",")
--
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