Little errata: you have only to install or update Cython, remove the .c files as I wrote before and run again
python setup.py build_ext -b PoissonSolver/ No intermediate steps are required. The generated ELF files are three. You have also to rename them with the names in the README file. On Mon, 9 Mar 2020 at 22:36, Marco Sulla <elbar...@gmail.com> wrote: > > I suppose you tried to use this setup.py: > https://github.com/breathe/coffee_conda_package/blob/master/0001-Add-alternative-setup.py-script.patch > > It's not well written IMHO... anyway this is not the problem. > > I suppose you also downloaded the required sources from here: > https://data.mendeley.com/datasets/s2x4d542dc/1 > > It seems the problem is that the above sources are generated by an old > version of Cython: > > https://github.com/mcfletch/pyopengl/issues/11 > > You have "simply" to enter any subdir of PoissonSolver that ends with > "_cy", remove the .c file inside and do: > python setup.py build_ext --inplace > > After that, you'll be able to compile. The result is an ELF file. On > my PC, the generated file is > PoissonSolver/PoissonSolver/ps3d.cpython-38-x86_64-linux-gnu.so > > On Mon, 9 Mar 2020 at 15:27, Tim Ko <thardaw...@gmail.com> wrote: > > > > Hello, > > > > I am trying to install a custom Python code but ran into an error. The > > error presumably associated with cython. I tried a different compiler since > > Intel compiler often crashes when using cython, but couldn't get it working. > > > > Attached is the installation error log. I have installed and updated all > > essential packages such as numpy and scipy. Could someone please give me > > advice to resolve this issue? Many thanks in advance. > > > > Sincerely, > > TK > > > > > > =================== > > $ python setup.py build_ext -b PoissonSolver/ > > running build_ext > > skipping 'PoissonSolver/MV_2D_cy/matvec2D.c' Cython extension (up-to-date) > > skipping 'PoissonSolver/MV_1D_cy/matvec1D.c' Cython extension (up-to-date) > > skipping 'PoissonSolver/PS_3D_cy/ps3d.c' Cython extension (up-to-date) > > building 'matvec2D' extension > > icc -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC > > -I/home01/r782a03/.conda/envs/hko_env/lib/python3.7/site-packages/numpy/core/include > > -I/home01/r782a03/.conda/envs/hko_env/include/python3.7m -c > > PoissonSolver/MV_2D_cy/matvec2D.c -o > > build/temp.linux-x86_64-3.7/PoissonSolver/MV_2D_cy/matvec2D.o -ffast-math > > icc: command line warning #10006: ignoring unknown option '-ffast-math' > > In file included from > > /home01/r782a03/.conda/envs/hko_env/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h(1830), > > from > > /home01/r782a03/.conda/envs/hko_env/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h(12), > > from > > /home01/r782a03/.conda/envs/hko_env/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h(4), > > from PoissonSolver/MV_2D_cy/matvec2D.c(232): > > /home01/r782a03/.conda/envs/hko_env/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h(17): > > warning #1224: #warning directive: "Using deprecated NumPy API, disable it > > with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" > > #warning "Using deprecated NumPy API, disable it with " \ > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17500): error: struct "_ts" has no field > > "exc_type" > > *type = tstate->exc_type; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17501): error: struct "_ts" has no field > > "exc_value" > > *value = tstate->exc_value; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17502): error: struct "_ts" has no field > > "exc_traceback" > > *tb = tstate->exc_traceback; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17514): error: struct "_ts" has no field > > "exc_type" > > tmp_type = tstate->exc_type; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17515): error: struct "_ts" has no field > > "exc_value" > > tmp_value = tstate->exc_value; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17516): error: struct "_ts" has no field > > "exc_traceback" > > tmp_tb = tstate->exc_traceback; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17517): error: struct "_ts" has no field > > "exc_type" > > tstate->exc_type = type; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17518): error: struct "_ts" has no field > > "exc_value" > > tstate->exc_value = value; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17519): error: struct "_ts" has no field > > "exc_traceback" > > tstate->exc_traceback = tb; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17562): error: struct "_ts" has no field > > "exc_type" > > tmp_type = tstate->exc_type; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17563): error: struct "_ts" has no field > > "exc_value" > > tmp_value = tstate->exc_value; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17564): error: struct "_ts" has no field > > "exc_traceback" > > tmp_tb = tstate->exc_traceback; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17565): error: struct "_ts" has no field > > "exc_type" > > tstate->exc_type = local_type; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17566): error: struct "_ts" has no field > > "exc_value" > > tstate->exc_value = local_value; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17567): error: struct "_ts" has no field > > "exc_traceback" > > tstate->exc_traceback = local_tb; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17589): error: struct "_ts" has no field > > "exc_type" > > tmp_type = tstate->exc_type; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17590): error: struct "_ts" has no field > > "exc_value" > > tmp_value = tstate->exc_value; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17591): error: struct "_ts" has no field > > "exc_traceback" > > tmp_tb = tstate->exc_traceback; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17592): error: struct "_ts" has no field > > "exc_type" > > tstate->exc_type = *type; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17593): error: struct "_ts" has no field > > "exc_value" > > tstate->exc_value = *value; > > ^ > > > > PoissonSolver/MV_2D_cy/matvec2D.c(17594): error: struct "_ts" has no field > > "exc_traceback" > > tstate->exc_traceback = *tb; > > ^ > > > > compilation aborted for PoissonSolver/MV_2D_cy/matvec2D.c (code 2) > > error: command 'icc' failed with exit status 2 > > =================== > > -- > > https://mail.python.org/mailman/listinfo/python-list -- https://mail.python.org/mailman/listinfo/python-list
