2016-10-29 21:38 GMT+02:00 <dishaachary...@gmail.com>:
>
> Code:
>
> [...]
>
> for i in range (len(protein) & len(seq1)) :
>
> if protein[i] != mutantPRO[i] :
> print (protein[i] + str(i) + mutantPRO[i])
> A+= 1
> else:
> if seq1[i:i+3] != mutant[i:i+3]:
> print(protein[i] + str(i) + mutantPRO[i] +'
Silent mutation ')
> print(seq1[i:i+3] + mutant[i:i+3])
> B+= 1
Hi,
The problem here is that you try to mix two different index in one
variable. Instead, you need to do something like this:
#i index protein
#j index DNA
for i in range (len(protein)) :
j = i*3
if protein[i] != mutantPRO[i] :
print (protein[i] + str(i) + mutantPRO[i])
A+= 1
else:
if seq1[j:j+3] != mutant[j:j+3]:
print(protein[i] + str(i) + mutantPRO[i] +' Silent mutation ')
print(seq1[j:j+3] + mutant[j:j+3])
B+=1
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