you can also try not to split and
set/activate the given frame in the for loop
it could happen that spectrum works on the active frame (which was the
last one in your case)
https://pymolwiki.org/index.php/Frame
On 8/31/20 2:16 PM, ZHANG Cheng wrote:
Thank you, this could be a solution. I would still like not splitting
the object if possible.
On 8/31/20 1:54 PM, Tamas Hegedus wrote:
You may write and use a script after splitting the object.
a pseudo code:
for i in range(1, 1001):
spectrum b, rainbow, frame_i
enable frame_i
sleep sometime
disable frame_i
On 8/31/20 12:56 PM, ZHANG Cheng wrote:
Hi Blaine,
Thank you for your suggestion. "set all_states, on" could not work.
For splitting the object, it is an alternatve. But I have 1000 frames
in the object, and I want to show a movie by playing the frames.
Best
Cheng
------------------ Original ------------------
*From:* "Mooers, Blaine H.M. (HSC)" <blaine-moo...@ouhsc.edu>;
*Date:* Mon, Aug 31, 2020 06:13 PM
*To:* "ZHANG
Cheng"<272699...@qq.com>;"pymol-users"<pymol-users@lists.sourceforge.net>;
*Subject:* RE: [EXTERNAL] [PyMOL] How to color based on b-factor for
all the frames in one object in Pymol?
Hi ZHANG Cheng,
Did you try?
set all_states, on;spectrum b
Another approach would to split the states into separate objects and
then apply the
spectrum command to each object.
split_states protein.pdb; prefix=test;spectrum b,,test*
Best regards,
Blaine
Blaine Mooers, Ph.D.
Associate Professor
Department of Biochemistry and Molecular Biology
College of Medicine
University of Oklahoma Health Sciences Center
S.L. Young Biomedical Research Center (BRC) Rm. 466
975 NE 10th Street, BRC 466
Oklahoma City, OK 73104-5419
________________________________________
From: ZHANG Cheng [272699...@qq.com]
Sent: Sunday, August 30, 2020 4:40 PM
To: pymol-users
Subject: [EXTERNAL] [PyMOL] How to color based on b-factor for all
the frames in one object in Pymol?
I load a protein.pdb file into Pymol. This file has multiple frames
(or states), and with different b-factor values at different frames
at the PDB file b-factor columns.
After running the "spectrum b" command, the colouring is only based
on the last state of the object.
So can I colour the frames differently using their corresponding
b-factor values? In that case, I can see the colour changing
throughout the frame playing.
_______________________________________________
PyMOL-users mailing list
Archives:http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Unsubscribe:https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
_______________________________________________
PyMOL-users mailing list
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Unsubscribe:
https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
