Hi Mungo, Introspecting the settings wrapper is a bit more tricky, but also possible:
from pymol import setting, stored stored.s2dict = lambda s: dict((setting.name_dict[n], s[n]) for n in s) iterate all, print(stored.s2dict(s)) I've updated the print() syntax in the documentation, thanks for the hint Blaine! Cheers, Thomas > On May 19, 2020, at 1:12 PM, Mungo Carstairs (Staff) > <g.m.carsta...@dundee.ac.uk> wrote: > > Hi Blaine, > > Thanks for that! > > And is there an equivalent for the settings in 's'? > So for example I can > PyMOL> iterate 4zho//A/26/CA,print(s.transparency) > PyMOL> 0.0 > but how to find all values in 's'? > > Best regards, > > Mungo > > > > > > Mungo Carstairs > Jalview Computational Scientist > The Barton Group > Division of Computational Biology > School of Life Sciences > University of Dundee, Dundee, Scotland, UK > www.jalview.org > www.compbio.dundee.ac.uk > g.m.carsta...@dundee.ac.uk > > We're Scottish University of the Year again! > The Times / Sunday Times Good University Guide 2016 and 2017 > From: Mooers, Blaine H.M. (HSC) <blaine-moo...@ouhsc.edu> > Sent: 19 May 2020 11:47 > To: Mungo Carstairs (Staff) <g.m.carsta...@dundee.ac.uk>; > pymol-users@lists.sourceforge.net<pymol-users@lists.sourceforge.net> > Subject: RE: How to inspect contents of 's' and 'p' for an atom? > > Hi Mungo, > > See https://pymol.org/dokuwiki/doku.php?id=properties. > > This command will print the dictionary of properties for all of the atoms: > > iterate /4zho//A/*/*, print(properties.all) > > Note the Python3 print() function. > The documentation needs to be updated. > > Best regards, > > Blaine > > Blaine Mooers, Ph.D. > Associate Professor > Department of Biochemistry and Molecular Biology > College of Medicine > University of Oklahoma Health Sciences Center > S.L. Young Biomedical Research Center (BRC) Rm. 466 > 975 NE 10th Street, BRC 466 > Oklahoma City, OK 73104-5419 > > ________________________________________ > From: Mungo Carstairs (Staff) [g.m.carsta...@dundee.ac.uk] > Sent: Tuesday, May 19, 2020 2:59 AM > To: pymol-users@lists.sourceforge.net > Subject: [EXTERNAL] [PyMOL] How to inspect contents of 's' and 'p' for an > atom? > > A PyMOL novice question here. > > I can write custom atom properties to its 'p' dictionary, and print them: > PyMOL>fetch 4zho > > PyMOL>iterate 4zho//A/26/CA, p.metal_binding='Fe' > > PyMOL>iterate 4zho//A/26/CA, print(p.metal_binding) > > Fe > > but how do I list the contents of the dictionary if I don't know what is in > it? > PyMOL>iterate 4zho//A/26/CA, print(p) > <wrapper.PropertyWrapper object at 0x1140dcdb0> > > Same question for 's': > PyMOL>iterate 4zho//A/26/CA, print(s) > <wrapper.SettingWrapper object at 0x1140dcdb0> > > Better still, where would I find documentation for this? > > Thanks, > > Mungo > > > Mungo Carstairs > Jalview Computational Scientist > > The Barton Group > Division of Computational Biology > > School of Life Sciences > > University of Dundee, Dundee, Scotland, UK -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
