Hi Blaine, Thanks for that!
And is there an equivalent for the settings in 's'? So for example I can PyMOL> iterate 4zho//A/26/CA,print(s.transparency) PyMOL> 0.0 but how to find all values in 's'? Best regards, Mungo [University of Dundee shield logo]<http://uod.ac.uk/sig-home> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<http://www.jalview.org> www.compbio.dundee.ac.uk<http://www.compbio.dundee.ac.uk> g.m.carsta...@dundee.ac.uk<mailto:g.m.carsta...@dundee.ac.uk> [University of Dundee Facebook]<http://uod.ac.uk/sig-fb> [University of Dundee Twitter] <http://uod.ac.uk/sig-tw> [University of Dundee LinkedIn] <http://uod.ac.uk/sig-li> [University of Dundee YouTube] <http://uod.ac.uk/sig-yt> [University of Dundee Instagram] <http://uod.ac.uk/sig-ig> [University of Dundee Snapchat] <http://uod.ac.uk/sig-sc> We're Scottish University of the Year again!<http://uod.ac.uk/sig-strapline> The Times / Sunday Times Good University Guide 2016 and 2017 ________________________________ From: Mooers, Blaine H.M. (HSC) <blaine-moo...@ouhsc.edu> Sent: 19 May 2020 11:47 To: Mungo Carstairs (Staff) <g.m.carsta...@dundee.ac.uk>; pymol-users@lists.sourceforge.net <pymol-users@lists.sourceforge.net> Subject: RE: How to inspect contents of 's' and 'p' for an atom? Hi Mungo, See https://pymol.org/dokuwiki/doku.php?id=properties. This command will print the dictionary of properties for all of the atoms: iterate /4zho//A/*/*, print(properties.all) Note the Python3 print() function. The documentation needs to be updated. Best regards, Blaine Blaine Mooers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology College of Medicine University of Oklahoma Health Sciences Center S.L. Young Biomedical Research Center (BRC) Rm. 466 975 NE 10th Street, BRC 466 Oklahoma City, OK 73104-5419 ________________________________________ From: Mungo Carstairs (Staff) [g.m.carsta...@dundee.ac.uk] Sent: Tuesday, May 19, 2020 2:59 AM To: pymol-users@lists.sourceforge.net Subject: [EXTERNAL] [PyMOL] How to inspect contents of 's' and 'p' for an atom? A PyMOL novice question here. I can write custom atom properties to its 'p' dictionary, and print them: PyMOL>fetch 4zho PyMOL>iterate 4zho//A/26/CA, p.metal_binding='Fe' PyMOL>iterate 4zho//A/26/CA, print(p.metal_binding) Fe but how do I list the contents of the dictionary if I don't know what is in it? PyMOL>iterate 4zho//A/26/CA, print(p) <wrapper.PropertyWrapper object at 0x1140dcdb0> Same question for 's': PyMOL>iterate 4zho//A/26/CA, print(s) <wrapper.SettingWrapper object at 0x1140dcdb0> Better still, where would I find documentation for this? Thanks, Mungo [University of Dundee shield logo]<https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dhome&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=pmTCDQ9ha-o3qwfjfSbuYLQz0XZbmOSqwVrXsZ_2fp0&e=> Mungo Carstairs Jalview Computational Scientist The Barton Group Division of Computational Biology School of Life Sciences University of Dundee, Dundee, Scotland, UK www.jalview.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.jalview.org&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=-UiHxQOxQJ-_dOEQTH12p44HwnTBPZR71UdC0t-S9vg&e=> www.compbio.dundee.ac.uk<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.compbio.dundee.ac.uk&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=4jADXbKgk9zw8K4gCxAuEXDQSjxy0lmWc0EcCG2MXAU&e=<http://www.compbio.dundee.ac.uk<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.compbio.dundee.ac.uk&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=4jADXbKgk9zw8K4gCxAuEXDQSjxy0lmWc0EcCG2MXAU&e=>> g.m.carsta...@dundee.ac.uk<mailto:g.m.carsta...@dundee.ac.uk> [University of Dundee Facebook]<https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dfb&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=Zv7b9JC5FguqJKxVXu1K946gu5V0etAuUPnXR35MUu4&e=> [University of Dundee Twitter] <https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dtw&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=1Ffrx9SKGrWzDqjyeTAuGpjVUqGg8Sxapr0EZhgHfIg&e=> [University of Dundee LinkedIn] <https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dli&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=wwbmhxKBB-TiP1rBRqcgODeW2XVHkwoL0DIxXJUk1-c&e=> [University of Dundee YouTube] <https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dyt&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=Hcdds1luVJjEi1Saa3IcNqJ0Q70RT8YXd4Ahjxurwqc&e=> [University of Dundee Instagram] <https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dig&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=N_u7d6oJDQUVwkWmZIfXmhFXCRlB12EXpwSNm0X51qg&e=> [University of Dundee Snapchat] <https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dsc&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=bOODMXMLnba1FlkGk19uhuQddPjh4Izro1_I1w5yQCM&e=> We're Scottish University of the Year again!<https://urldefense.proofpoint.com/v2/url?u=http-3A__uod.ac.uk_sig-2Dstrapline&d=DwMFAw&c=VjzId-SM5S6aVB_cCGQ0d3uo9UfKByQ3sI6Audoy6dY&r=k0gMbcsdOcdbPUNV5tW66KQSZfXL0ewVDPVBp7tqbks&m=HcZyTYAYwxaDM5jVRMvsUZT9bqmuiT6GegR62OpE3WY&s=79G2qVcWHlmL2CO5JAcN3ioTZmioZPCvOToJnlPfBoo&e=> The Times / Sunday Times Good University Guide 2016 and 2017 The University of Dundee is a registered Scottish Charity, No: SC015096 The University of Dundee is a registered Scottish Charity, No: SC015096
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