Hi Thomas, I have no idea why, but it seems to work for me when following your instructions. Perhaps because I deleted everything except for the ATOM records?
Thanks for looking into it! Best wishes, Chris <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> Virus-free. www.avg.com <http://www.avg.com/email-signature?utm_medium=email&utm_source=link&utm_campaign=sig-email&utm_content=webmail> <#DAB4FAD8-2DD7-40BB-A1B8-4E2AA1F9FDF2> On Wed, Aug 21, 2019 at 4:48 PM Thomas Holder <thomas.hol...@schrodinger.com> wrote: > Hi Chris, > > Works for me. Do you have an example file that doesn't work for you? > > "Works for me" steps to reproduce: > - remove everything but ATOM records from 1ubq.pdb (raw.pdb) > - run stride on raw.pdb > - paste stride output on website > - paste website result into PDB file (stride.pdb) > - load stride.pdb and raw.pdb with PyMOL > -> Result: Cartoons differ > > Cheers, > Thomas > > > On Aug 20, 2019, at 11:05 AM, Chris Fage <fage...@gmail.com> wrote: > > > > Dear All, > > > > Pymol seems to ignore the HELIX and SHEET records in my coordinate file, > and instead assigns secondary structural features according to the default > method. Unless my understanding is flawed, these records should override > Pymol's assignment...? > > > > I generated the records with the Stride Web Interface and converted them > to PDB format with Emma Rath's website ( > http://www.canoz.com/sdh/STRIDEtoPDBsecondarystruct.pl). > > > > Does anyone have any ideas? Thanks! > > > > Best wishes, > > Chris > > > > Virus-free. www.avg.com > > _______________________________________________ > > PyMOL-users mailing list > > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe > > -- > Thomas Holder > PyMOL Principal Developer > Schrödinger, Inc. > >
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