Hi Chris, Works for me. Do you have an example file that doesn't work for you?
"Works for me" steps to reproduce: - remove everything but ATOM records from 1ubq.pdb (raw.pdb) - run stride on raw.pdb - paste stride output on website - paste website result into PDB file (stride.pdb) - load stride.pdb and raw.pdb with PyMOL -> Result: Cartoons differ Cheers, Thomas > On Aug 20, 2019, at 11:05 AM, Chris Fage <fage...@gmail.com> wrote: > > Dear All, > > Pymol seems to ignore the HELIX and SHEET records in my coordinate file, and > instead assigns secondary structural features according to the default > method. Unless my understanding is flawed, these records should override > Pymol's assignment...? > > I generated the records with the Stride Web Interface and converted them to > PDB format with Emma Rath's website > (http://www.canoz.com/sdh/STRIDEtoPDBsecondarystruct.pl). > > Does anyone have any ideas? Thanks! > > Best wishes, > Chris > > Virus-free. www.avg.com > _______________________________________________ > PyMOL-users mailing list > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net > Unsubscribe: > https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe -- Thomas Holder PyMOL Principal Developer Schrödinger, Inc. _______________________________________________ PyMOL-users mailing list Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net Unsubscribe: https://sourceforge.net/projects/pymol/lists/pymol-users/unsubscribe
